View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20699_high_5 (Length: 440)
Name: NF20699_high_5
Description: NF20699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20699_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 386; Significance: 0; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 21 - 427
Target Start/End: Complemental strand, 35530270 - 35529862
Alignment:
| Q |
21 |
ctgttatggtatatttatggtatagttactgacatgacaagttagttacataaattccaaaatatatgatccattactattttcaaaataatccccaaaa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35530270 |
ctgttatggtatatttatggtatagttactgacatgacaagttagttacataaattccaaaatatatgatccattactattttcaaaataatccccaaaa |
35530171 |
T |
|
| Q |
121 |
tttataatgttgttttaccttaaaactcaaaagtgataacagttattgataagttggcaggtttcaaatggtatagtcataactaaaatgaattagatac |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35530170 |
tttataatgttgttttaccttaaaactcaaaagtgataacagttattgataagttggcaggtttcaaatggtatagtcataactaaaatgaattagatac |
35530071 |
T |
|
| Q |
221 |
caaaaaaga--actttaaaggacttttaaatggttaacagctgtgtgatctatcaaagttcactggaatcataacatatatgacgagtgatcctactatt |
318 |
Q |
| |
|
||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35530070 |
caaaaaaaaacacttaaaaggacttttaaatggttaacagctgtgtgatctatcaaagttcactggaatcataacatatatgacgagtgatcctactatt |
35529971 |
T |
|
| Q |
319 |
tcagatcactagaaacggtagtacttccagagtcattaaatactgagacggtggttcagaagtcatcgaacactgagatggtggttccaaactcatcaaa |
418 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35529970 |
tcagatcactagaaacggtagtacttccagagtcattaaatactgagacggtggttcagaagtcatcgaacactgagatggtggttccaaagtcatcaaa |
35529871 |
T |
|
| Q |
419 |
cacaaatat |
427 |
Q |
| |
|
||||||||| |
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|
| T |
35529870 |
cacaaatat |
35529862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 42 - 427
Target Start/End: Complemental strand, 35537728 - 35537342
Alignment:
| Q |
42 |
atagttactgacatgacaagttagttacataaattccaaaatatatgatccattactattttcaaaataatccccaaaatttataatgttgttttacctt |
141 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
35537728 |
atagttactgacatggcaagttagttacataaattccaaaatatatgatccattactattttcaaaataatccccaaaatttataatcttgttttacctt |
35537629 |
T |
|
| Q |
142 |
aaaactcaaaagtgataacagttattgataagttggcaggtttcaaatggtatagtcataactaaaatgaattagataccaaaaaagaac--tttaaagg |
239 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||| |
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| T |
35537628 |
aaaactcaaaagtg-taacagttattgataagttggcaggtttcaaatggtatagtcataactaaaatgaattagataccaaaaaaaaacacttaaaagg |
35537530 |
T |
|
| Q |
240 |
acttttaaatggttaacagctgtgtgatctatcaaagttcactggaatcataacatatatgacgagtgatcctactatttcagatcactagaaacggtag |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35537529 |
acttttaaatggttaacagctgtgtgatctatcaaagttcactggaatcataacatatatgacgagtgatcctactatttcagatcactagaaacggtag |
35537430 |
T |
|
| Q |
340 |
tacttccagagtcattaaatactgagacggtggttcagaagtcatcgaacactgagatggtggttccaaactcatcaaacacaaatat |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
35537429 |
tacttccagagtcattaaatactgagacggtggttcagaagtcatcgaacactgagatggtggttccaaagtcatcaaacacaaatat |
35537342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 42 - 260
Target Start/End: Complemental strand, 35530509 - 35530291
Alignment:
| Q |
42 |
atagttactgacatgacaagttagttacataaattccaaaatatatgatccattactattttcaaaataatccccaaaatttataatgttgttttacctt |
141 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
35530509 |
atagttactgacatgacaagttagttacacaaattccaaaatatatgatccattacaattttcaaaataatccccaaaatttataatgctgttttacctt |
35530410 |
T |
|
| Q |
142 |
aaaactcaaaagtgataacagttattgataagttggcaggtttcaaatggtatagtcataactaaaatgaattagataccaaaaaagaactttaaaggac |
241 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
35530409 |
aaaactcaaaagtgataacagttatttataagttggcaggtttcaaatggtatagtcataactaaaaagaattagataccaaaaaagaactttaaaggat |
35530310 |
T |
|
| Q |
242 |
ttttaaatggttaacagct |
260 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
35530309 |
ttttaaatggttaacagct |
35530291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 35 - 258
Target Start/End: Complemental strand, 35543705 - 35543482
Alignment:
| Q |
35 |
ttatggtatagttactgacatgacaagttagttacataaattccaaaatatatgatccattactattttcaaaataatccccaaaatttataatgttgtt |
134 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
35543705 |
ttatggtatagttactgacatggtaagttagtaacataaactccaaaatatatgatccattactattttcaaaataattcccaaaatttataatgttgtt |
35543606 |
T |
|
| Q |
135 |
ttaccttaaaactcaaaagtgataacagttattgataagttggcaggtttcaaatggtatagtcataactaaaatgaattagataccaaaaaagaacttt |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
35543605 |
ttaccttaaaactcaaaagtgataacagttattgataagttggcaggtttcaaatggtatagtcataactaaaaggaattagataccaaaaaagaacttg |
35543506 |
T |
|
| Q |
235 |
aaaggacttttaaatggttaacag |
258 |
Q |
| |
|
|||||| ||||||||||||||||| |
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|
| T |
35543505 |
aaaggatttttaaatggttaacag |
35543482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 35 - 258
Target Start/End: Complemental strand, 35561447 - 35561224
Alignment:
| Q |
35 |
ttatggtatagttactgacatgacaagttagttacataaattccaaaatatatgatccattactattttcaaaataatccccaaaatttataatgttgtt |
134 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
35561447 |
ttatggtatagttactgacatggtaagttagtaacataaactccaaaatatatgatccattactattttcaaaataattcccaaaatttataatgttgtt |
35561348 |
T |
|
| Q |
135 |
ttaccttaaaactcaaaagtgataacagttattgataagttggcaggtttcaaatggtatagtcataactaaaatgaattagataccaaaaaagaacttt |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
35561347 |
ttaccttaaaactcaaaagtgataacagttattgataagttggcaggtttcaaatggtatagtcataactaaaaggaattagataccaaaaaagaacttg |
35561248 |
T |
|
| Q |
235 |
aaaggacttttaaatggttaacag |
258 |
Q |
| |
|
|||||| ||||||||||||||||| |
|
|
| T |
35561247 |
aaaggatttttaaatggttaacag |
35561224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 258 - 427
Target Start/End: Complemental strand, 35577771 - 35577602
Alignment:
| Q |
258 |
gctgtgtgatctatcaaagttcactggaatcataacatatatgacgagtgatcctactatttcagatcactagaaacggtagtacttccagagtcattaa |
357 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35577771 |
gctgtgtgatctatcgaagttcactggaatcatagcatatatgacgagtgatcctactatttcagatcactagaaacggtagtacttccagagtcattaa |
35577672 |
T |
|
| Q |
358 |
atactgagacggtggttcagaagtcatcgaacactgagatggtggttccaaactcatcaaacacaaatat |
427 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
35577671 |
atactgagacggtggttccgaagtcatcaaacactgagatggtggttccaaattcatcaaacacaaatat |
35577602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 185 - 260
Target Start/End: Complemental strand, 35561546 - 35561471
Alignment:
| Q |
185 |
caaatggtatagtcataactaaaatgaattagataccaaaaaagaactttaaaggacttttaaatggttaacagct |
260 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
35561546 |
caaatggtatagtcataactaaaaagaattagataccaaaaaagaactttaaaggatttttaaatggttaacagct |
35561471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 42 - 119
Target Start/End: Complemental strand, 35561620 - 35561543
Alignment:
| Q |
42 |
atagttactgacatgacaagttagttacataaattccaaaatatatgatccattactattttcaaaataatccccaaa |
119 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
35561620 |
atagttactgacatggcaagttagttgcataaattccaaaatatatgatctattactattttcaaaataatccccaaa |
35561543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 258 - 338
Target Start/End: Complemental strand, 35559849 - 35559769
Alignment:
| Q |
258 |
gctgtgtgatctatcaaagttcactggaatcataacatatatgacgagtgatcctactatttcagatcactagaaacggta |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |||||||||| | ||||||||||| ||||||||||||| |
|
|
| T |
35559849 |
gctgtgtgatctatcaaagttcactggaatcatagcatatataacgagtgatcttgctatttcagataactagaaacggta |
35559769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 198 - 260
Target Start/End: Complemental strand, 35543791 - 35543729
Alignment:
| Q |
198 |
cataactaaaatgaattagataccaaaaaagaactttaaaggacttttaaatggttaacagct |
260 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
35543791 |
cataactaaaaagaattagataccaaaaaagaactttaaaggatttttaaatggttaacagct |
35543729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 129
Target Start/End: Original strand, 35886846 - 35886905
Alignment:
| Q |
70 |
ataaattccaaaatatatgatccattactattttcaaaataatccccaaaatttataatg |
129 |
Q |
| |
|
|||||||||||||| || |||| |||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
35886846 |
ataaattccaaaatttaagatcgattaatattttcaaaataatccccaaaattgataatg |
35886905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 35906075 - 35906135
Alignment:
| Q |
68 |
acataaattccaaaatatatgatccattactattttcaaaataatccccaaaatttataat |
128 |
Q |
| |
|
||||||||| ||||| || |||| |||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
35906075 |
acataaattttaaaatgtaagatcaattaatattttcaaaataatccccaaaattgataat |
35906135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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