View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20699_low_10 (Length: 325)
Name: NF20699_low_10
Description: NF20699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20699_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 24 - 276
Target Start/End: Complemental strand, 6198370 - 6198123
Alignment:
| Q |
24 |
aattgcatgaaattcgttgcttctcttctcttgctatgctacttgttgattttctcgcactagttgcttgggttcttaattggtatgcttgcttcattga |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6198370 |
aattgcatgaaattcgttgcttctcttctcttgctctgctacttgttgattttctcgcactagttgctcgggttcttaattggtatgcttgcttcattga |
6198271 |
T |
|
| Q |
124 |
tacaaattaggaatcaattattgctacacttttcttatatattcaggaattaaatacaaaaaatagagaatcaactgtttttgtgtgtgttaagcatccg |
223 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
6198270 |
tacaagttaggaatcaattattgctacacttttcttatatattcaggaattaaatacaaaaaatagagaa-----tgtttttttgtgtgttaagcatccg |
6198176 |
T |
|
| Q |
224 |
attcgtagagtttgaccaaaagataagtaaacaggttctcctgaaaaatttgt |
276 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6198175 |
attcgtagagtttgaccaaaagataagtcaacaggttctcctgaaaaatttgt |
6198123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 295
Target Start/End: Original strand, 22188244 - 22188280
Alignment:
| Q |
259 |
ttctcctgaaaaatttgtcatttggtggagcacatta |
295 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
22188244 |
ttctcctgaacaatttgtcatttggtggagctcatta |
22188280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University