View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20699_low_12 (Length: 297)

Name: NF20699_low_12
Description: NF20699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20699_low_12
NF20699_low_12
[»] scaffold0483 (1 HSPs)
scaffold0483 (193-234)||(3640-3681)
[»] scaffold0109 (1 HSPs)
scaffold0109 (193-234)||(48480-48521)
[»] chr8 (2 HSPs)
chr8 (193-234)||(6787810-6787851)
chr8 (193-234)||(6765380-6765421)
[»] chr2 (1 HSPs)
chr2 (193-234)||(28620431-28620472)
[»] scaffold0018 (1 HSPs)
scaffold0018 (193-234)||(125988-126029)
[»] chr7 (2 HSPs)
chr7 (197-234)||(20027779-20027816)
chr7 (129-165)||(20027893-20027929)
[»] chr4 (1 HSPs)
chr4 (193-234)||(14694239-14694280)
[»] chr6 (1 HSPs)
chr6 (193-234)||(14647765-14647806)


Alignment Details
Target: scaffold0483 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0483
Description:

Target: scaffold0483; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 234
Target Start/End: Original strand, 3640 - 3681
Alignment:
Q  193 tagttaatgattaacaaatgattgaatagtaaaatgaacatt 234  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  3640 tagttaatgattaacaaatgattgaatagcaaaatgaacatt 3681  T

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Target: scaffold0109 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0109
Description:

Target: scaffold0109; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 234
Target Start/End: Original strand, 48480 - 48521
Alignment:
Q  193 tagttaatgattaacaaatgattgaatagtaaaatgaacatt 234  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  48480 tagttaatgattaacaaatgattgaatagcaaaatgaacatt 48521  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 234
Target Start/End: Complemental strand, 6787851 - 6787810
Alignment:
Q  193 tagttaatgattaacaaatgattgaatagtaaaatgaacatt 234  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  6787851 tagttaatgattaataaatgattgaatagtaaaatgaacatt 6787810  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 234
Target Start/End: Complemental strand, 6765421 - 6765380
Alignment:
Q  193 tagttaatgattaacaaatgattgaatagtaaaatgaacatt 234  Q
    |||||||||||||| ||||||||||||| |||||||||||||    
T  6765421 tagttaatgattaataaatgattgaataataaaatgaacatt 6765380  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 234
Target Start/End: Complemental strand, 28620472 - 28620431
Alignment:
Q  193 tagttaatgattaacaaatgattgaatagtaaaatgaacatt 234  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  28620472 tagttaatgattaacaaataattgaatagtaaaatgaacatt 28620431  T

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Target: scaffold0018 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 234
Target Start/End: Original strand, 125988 - 126029
Alignment:
Q  193 tagttaatgattaacaaatgattgaatagtaaaatgaacatt 234  Q
    |||||||| |||||||||||||||||||| ||||||||||||    
T  125988 tagttaattattaacaaatgattgaatagcaaaatgaacatt 126029  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 234
Target Start/End: Complemental strand, 20027816 - 20027779
Alignment:
Q  197 taatgattaacaaatgattgaatagtaaaatgaacatt 234  Q
    |||||||||| |||||||||||||||||||||||||||    
T  20027816 taatgattaataaatgattgaatagtaaaatgaacatt 20027779  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 165
Target Start/End: Complemental strand, 20027929 - 20027893
Alignment:
Q  129 ttctttcaatttttgtgtttgaactgacatatttctt 165  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  20027929 ttctttcaatttttgtgtttgagctgccatatttctt 20027893  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 234
Target Start/End: Original strand, 14694239 - 14694280
Alignment:
Q  193 tagttaatgattaacaaatgattgaatagtaaaatgaacatt 234  Q
    ||||||||||||||||||||||||||||  ||||||||||||    
T  14694239 tagttaatgattaacaaatgattgaataacaaaatgaacatt 14694280  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 234
Target Start/End: Original strand, 14647765 - 14647806
Alignment:
Q  193 tagttaatgattaacaaatgattgaatagtaaaatgaacatt 234  Q
    |||||||||||||||||||||||||| |  ||||||||||||    
T  14647765 tagttaatgattaacaaatgattgaaaaacaaaatgaacatt 14647806  T

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