View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20699_low_13 (Length: 283)
Name: NF20699_low_13
Description: NF20699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20699_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 42237668 - 42237944
Alignment:
| Q |
1 |
ttgaaaaatggtgtgctttatatcactgttcctaagaccaaagttgaacgcaaggttattgacgttcaaatccagtgacatgcgaggactttttatagcg |
100 |
Q |
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| T |
42237668 |
ttgaaaaatggtgtgctttatatcactgttcctaagaccaaagttgaacgcaaggttattgacgttcaaatccagtgacatgcgaggactttttatagcg |
42237767 |
T |
|
| Q |
101 |
tcatcttcaactggtgtgcttatatattttgctaccatgtaacaatg--tttattaagttaaaaataaataagatacttttctactttgcaaatgtctac |
198 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42237768 |
tcctcttcaactggtgtgcttatatattttgctaccatgtaacaatgtttttattaagttaaaaataaataagatacttttctactttgcaaatgtctac |
42237867 |
T |
|
| Q |
199 |
ttctccttatatatttaggtatggtttctttggtattgat-tttgttagtttgtttgaaagaatttatgagaataat |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
42237868 |
ttctccttatatatttaggtatggtttctttggtattgatctttgttagtttgtttgaaagaatttatgaaaataat |
42237944 |
T |
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