View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20699_low_14 (Length: 280)
Name: NF20699_low_14
Description: NF20699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20699_low_14 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 113 - 280
Target Start/End: Complemental strand, 38121055 - 38120888
Alignment:
| Q |
113 |
aaaataaaattaaggaaaaagagctaggaagacgaagagaaatagagtttgaactaaccaaacttgtgctttgttcttactgaaaagaaaaacagtgtga |
212 |
Q |
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| T |
38121055 |
aaaataaaattaaggaaaaagagctaggaagacgaagagaaatagagtttgaactaaccaaacttgtgctttgttcttactgaaaagaaaaacagtgtga |
38120956 |
T |
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| Q |
213 |
agtaaccaaagataatgaagagggtaaagtgtttggttaaagagaaagatagcatgattctatttata |
280 |
Q |
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| T |
38120955 |
agtaaccaaagataatgaagagggtaaagtgtttggttaaagagaaagatagcatgattctatttata |
38120888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 38121197 - 38121094
Alignment:
| Q |
18 |
aaaacaactgaaaaccttgtgtttaccacattacaaaataaaaacatgcaaagttaagataaaaactacatgaacattaccagttaccacattacaaaat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38121197 |
aaaacaactgaaaaccttgtgtttaccacattacaaaataaaaacatgcaaagttaagataaaaactacatgaacattaccagttaccacattacaaaat |
38121098 |
T |
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| Q |
118 |
aaaa |
121 |
Q |
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|||| |
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| T |
38121097 |
aaaa |
38121094 |
T |
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