View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20699_low_17 (Length: 250)
Name: NF20699_low_17
Description: NF20699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20699_low_17 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 20761487 - 20761730
Alignment:
| Q |
8 |
ccaagaaaattaatgtagaat-gattgttgagttcgaattctctgcagtcacgccattgtcgatatgaactgtcaaatcaagattgatccgcttgtgtac |
106 |
Q |
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| T |
20761487 |
ccaaaaaacttaatgtagaatcgattgttgagttcaaaatctctgcagtcacgccattgccgatatgaactgtcaaatcaagattgatccgcttgtgtac |
20761586 |
T |
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| Q |
107 |
attttgaacatgatttatcaaagttgtagtacaattcgttcgatctcaatccaacaacggtccaaatcctaatctagttgaccttgtgcaccctaaatga |
206 |
Q |
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| T |
20761587 |
attttgaacatgatttatcaaagttgtagtacaattcgttcgatctcgatccaacaacggtccaaatcctaatctagttgaccttgtgcaccctaaataa |
20761686 |
T |
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| Q |
207 |
ccaacatgaatgtaatcaagcataaatcacttttccttggggaa |
250 |
Q |
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| T |
20761687 |
ccaacatgaatgtaatcaagcataaatcacttttccttggggaa |
20761730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 42 - 93
Target Start/End: Original strand, 20749551 - 20749602
Alignment:
| Q |
42 |
gaattctctgcagtcacgccattgtcgatatgaactgtcaaatcaagattga |
93 |
Q |
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| T |
20749551 |
gaattctctgcagtcacaccattaccgatatgaactgtcaaatcaagattga |
20749602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 20749682 - 20749718
Alignment:
| Q |
214 |
gaatgtaatcaagcataaatcacttttccttggggaa |
250 |
Q |
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| T |
20749682 |
gaatgtaattaagcataaatcacttttccttgaggaa |
20749718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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