View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20699_low_19 (Length: 237)
Name: NF20699_low_19
Description: NF20699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20699_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 20750000 - 20750222
Alignment:
| Q |
3 |
ataaggttgcaatcaattaacacaaaatcagctttgtttaacaccaataattctcgtgcttct---ccaaccatgaattgcacttgattagaagctgctc |
99 |
Q |
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| T |
20750000 |
ataaggttgcaatcaattaacacaaaatcagctttgtttaacaccaataattcttgtgctccttttccaatcatgaattgaacttgattagaagccgctc |
20750099 |
T |
|
| Q |
100 |
ctaggannnnnnnagatgtgattagatcttcgttggtaggaacaatgcatattactttgccatttgtttgattagcagcaacaactaatgcaagtgttgt |
199 |
Q |
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| T |
20750100 |
ctaggattttttttgatgtgattagatcttcgatggtaggaacaatgcatattactttgccatttgtttgattagcagcagcaactaatgcaagtgttgt |
20750199 |
T |
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| Q |
200 |
tgaatctgctgcaccagcacaag |
222 |
Q |
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|| |||||||||||||||||||| |
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| T |
20750200 |
tggatctgctgcaccagcacaag |
20750222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 20762010 - 20762229
Alignment:
| Q |
1 |
tcataaggttgcaatcaattaacacaaaatcagctttgtttaacaccaataattctcgtgcttctccaaccatgaattgcacttgattagaagctgctcc |
100 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||| ||||||||| |||||||||||||||||||| |
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| T |
20762010 |
tcatatggttgcaatcaattaacacaaaatcagctttgtttaacaccaataatgctt---cttttccaatcatgaattggacttgattagaagctgctcc |
20762106 |
T |
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| Q |
101 |
taggannnnnnnagatgtgattagatcttcgttggtaggaacaatgcatattactttgccatttgtttgattagcagcaacaactaatgcaagtgttgtt |
200 |
Q |
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| T |
20762107 |
taggatttttttagatgtgattagatcttcgttggtaggaacaatgcatattactttgccattagtttgattagcagcagaaactaatgcaagtgttgtt |
20762206 |
T |
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| Q |
201 |
gaatctgctgcaccagcacaagt |
223 |
Q |
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| T |
20762207 |
gtatctgctgcaccagcacaagt |
20762229 |
T |
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