View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20699_low_20 (Length: 237)
Name: NF20699_low_20
Description: NF20699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20699_low_20 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 49 - 237
Target Start/End: Complemental strand, 6198657 - 6198468
Alignment:
| Q |
49 |
taaaaattaattcaattttttattataa-gttttcattgactttgattaatgttatgataaattttaagcgacgaccctaagtcttcgcgtcgaaattga |
147 |
Q |
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| T |
6198657 |
taaaaattaattcaattttttattataaagttttcattgactttgattaatgttatgataaattttaagcgacgaccctaagtcttcgcgtcgaaattga |
6198558 |
T |
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| Q |
148 |
agtataataatgcattaatatagatggtatttttgtaaatctctttcacataaaaacaccgcaaacgatttcgtttccctcgctctgcat |
237 |
Q |
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| T |
6198557 |
agtataataatgcattaatatagagggtatttttgtaaatctttttcacataaaaacaccgcaaacgctttcgtttccctcgctctgcat |
6198468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 6199200 - 6199151
Alignment:
| Q |
8 |
tacttaaagggtggttgtagtaaaaaacaatatttttgcattaaaaatta |
57 |
Q |
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| T |
6199200 |
tacttaaagggtggttgcagtaaaaaacaatatttttgcattaaaaatta |
6199151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 100 - 158
Target Start/End: Complemental strand, 6149514 - 6149456
Alignment:
| Q |
100 |
ttatgataaattttaagcgacgaccctaagtcttcgcgtcgaaattgaagtataataat |
158 |
Q |
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| T |
6149514 |
ttatgataaattttaagagacgactctaagtctttgcgtccaaattgaagtataataat |
6149456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 166
Target Start/End: Original strand, 6122471 - 6122540
Alignment:
| Q |
94 |
ttaatgttatgataaattttaagcgacgaccctaagtcttcgcgtcgaaattgaagtataataatgcattaat |
166 |
Q |
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| T |
6122471 |
ttaatgttatgatacattttaagcgact---ctaagtctttgcctccaaattgaagtataataatgtattaat |
6122540 |
T |
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