View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20699_low_21 (Length: 235)
Name: NF20699_low_21
Description: NF20699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20699_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 39005492 - 39005695
Alignment:
| Q |
18 |
catggctgggaaaattacctcagttaggagagcttaagctctcctccaacaatttttccggacctcttccattaggcctattcaaatgttccaatttact |
117 |
Q |
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| T |
39005492 |
catggctgggaaaattacctcagttaggagagcttaagctctcctccaacaatttttccggacctcttccattaggcctattcaaatgttccaatttact |
39005591 |
T |
|
| Q |
118 |
agttctctctctgaatgaaaactcactcaatggaagcctcccagctgatattggtgatcttacatatcttaatgtccttcgacttgaccgtaataagttc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39005592 |
agttctctctctgaatgaaaactcactcaatggaagcctcccagctgatattggtgatcttacatatcttaatgtccttcgacttgaccgtaataagttc |
39005691 |
T |
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| Q |
218 |
tctg |
221 |
Q |
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|||| |
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| T |
39005692 |
tctg |
39005695 |
T |
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