View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20699_low_23 (Length: 228)
Name: NF20699_low_23
Description: NF20699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20699_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 37876899 - 37877121
Alignment:
| Q |
1 |
acccttaaagccacccatattatttgactgctggtactattttatacaatgtaactccgagaa---gcagcatgtgtaacctacaaataaaattctaatc |
97 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
37876899 |
acccttaaagccacccatattatttgactgctggtactattt-atacaatgtaactccgagaaccagcagcatgtgtaacctacaaagaaaattctaatc |
37876997 |
T |
|
| Q |
98 |
ctgtttcctcatatctacacctagctagctgaaaatcctaccgtctgtcaatcactgacaaacaaatcacgatgtttaagatgaattcgatctccgcagt |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37876998 |
ctgtttcctcatatctacacctagctagctgaaaatcctaccgtctgtcaatcacagacaaacaaatcacgatgtttaagatgaatttgatctccgcagt |
37877097 |
T |
|
| Q |
198 |
ttccgttttggtctgtgctgctcc |
221 |
Q |
| |
|
|||||||||||||| |||||||| |
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| T |
37877098 |
ttccgttttggtcttggctgctcc |
37877121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 23894782 - 23894560
Alignment:
| Q |
1 |
acccttaaagccacccatattatttgactgctggtactattttatacaatgtaactccgagaa---gcagcatgtgtaacctacaaataaaattctaatc |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
23894782 |
acccttaaagccacccatattatttgactgctggtactattt-atacaatgtaactccgagaaccagcagcatgtgtaacctacaaagaaaattctaatc |
23894684 |
T |
|
| Q |
98 |
ctgtttcctcatatctacacctagctagctgaaaatcctaccgtctgtcaatcactgacaaacaaatcacgatgtttaagatgaattcgatctccgcagt |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
23894683 |
ctgtttcctcatatctacacctagctagctgaaaatcctaccgtctgtcaatcacagacaaacaaatcacgatgtttaagatgaatttgatctccgcagt |
23894584 |
T |
|
| Q |
198 |
ttccgttttggtctgtgctgctcc |
221 |
Q |
| |
|
|||||||||||||| |||||||| |
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|
| T |
23894583 |
ttccgttttggtcttggctgctcc |
23894560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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