View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20699_low_24 (Length: 216)
Name: NF20699_low_24
Description: NF20699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20699_low_24 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 11 - 216
Target Start/End: Original strand, 38120387 - 38120592
Alignment:
| Q |
11 |
cacagacatgaagctcttgtcatggaacaaagacctgagtgtgatgaagaaagaatgaagacgaacaaagattattgtgtgatgaatgatgaaacaaaat |
110 |
Q |
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| T |
38120387 |
cacaggcatgaagctcttgtcatggaacaaagacctgagtgtgatgaagaaagaatgaagacgaacaaagattattgtgtgatgaatgatgaaacaaaat |
38120486 |
T |
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| Q |
111 |
attcaaccataagcttgttcnnnnnnnnnnnnnttcaacaataaatcccaatcttccttcttttcatttcacattatggcgaagagatgaagcaaaggga |
210 |
Q |
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| T |
38120487 |
attcaaccataagcttgttcaaaaaaataaaaattcaacaataaatcccaatcttccttcttttcatttcacattatggcgaagagatgaagcaaaggga |
38120586 |
T |
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| Q |
211 |
atgtag |
216 |
Q |
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|||||| |
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| T |
38120587 |
atgtag |
38120592 |
T |
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