View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20699_low_4 (Length: 478)
Name: NF20699_low_4
Description: NF20699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20699_low_4 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 394; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 11 - 478
Target Start/End: Original strand, 35529458 - 35529925
Alignment:
| Q |
11 |
cacagaagcacaatcagaaaagatgagagtcattaaaaaaggtaaagcaaaaccgatctttaaccgaagctacctttccgtgagaatagtaagcaacttt |
110 |
Q |
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|||| ||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35529458 |
cacaaaagcacaatcagaaaagattaaagtcattaaaaaaggtaaagcaaaacccatctttaaccgaagctacctttccgtgagaatagtaagcaacttc |
35529557 |
T |
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| Q |
111 |
agctccatctagtaacaagtcttcttcaaataccaacttatgcaaccgtagatccctatcaaaataggatcaagaaaaagagaaaaatttaaattcctga |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35529558 |
agctccatctagtaacaagtcttcttcaaataccaacttatgcaaccgtagatccctatcaaaataggatcaagaaaaagagaaaaatttaaattcctga |
35529657 |
T |
|
| Q |
211 |
taacactagaacaccgtgtgttaatgcatataatatacatctaaatcagtaaattctaannnnnnnnnncaaatgtgttaagtgcttaagaatcatactt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35529658 |
taacactagaacaccgtgtgttaatgcatataatatacatctaaatcagtaaattctatttttttttttcaaatgtgttaagtgcttaagaatcatactt |
35529757 |
T |
|
| Q |
311 |
actttctagttatttttccccgactcttgccgcgagatgcactctgcttcatgccattattcaatgcctttggaatcatatttttggctgatgtctctcg |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35529758 |
actttctagttatttttccccgactcttgccgcgagatgcactctgcttcatgccattattcaatgcctttggaatcatatttgtggctgatgtctctcg |
35529857 |
T |
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| Q |
411 |
aaccatatttgtgtttgatgagttgggaaccaccatctcagagatcgatgacttctgaaccaccgtct |
478 |
Q |
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| T |
35529858 |
aaccatatttgtgtttgatgactttggaaccaccatctcagtgttcgatgacttctgaaccaccgtct |
35529925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 11 - 478
Target Start/End: Original strand, 35536930 - 35537405
Alignment:
| Q |
11 |
cacagaagcacaatcagaaaagatgagagtcattaaaaaaggtaaagcaaaaccgatctttaaccgaagctacctttccgtgagaatagtaagcaacttt |
110 |
Q |
| |
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|||| ||||||||||||||||||||| || | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35536930 |
cacaaaagcacaatcagaaaagatgaaagccgttaaaaaaggtaaagcaaaacc-atctttaaccgaagctacctttccgtgagaatagtaagaaacttc |
35537028 |
T |
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| Q |
111 |
agctccatctagtaacaagtcttcttcaaataccaacttatgcaaccgtagatccctatcaaaataggatcaagaaaaagagaaaaatttaaattcctga |
210 |
Q |
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|||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||| |||| ||||| |
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| T |
35537029 |
agctccatctggtaacacgtcttcttcaaataccaacttatgcaaccgtacatccctatcaaaataggatcaagaatcagagcaaaattaaaatccctga |
35537128 |
T |
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| Q |
211 |
taacactagaacaccgtgtgttaatgcatataatata-------catctaaatcagtaaattctaannnnnnnnnn---caaatgtgttaagtgcttaag |
300 |
Q |
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| | |||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
35537129 |
tgaaactagaacgccgtgtgttaatgcatataatatataatatacatctaaatcagtaaattctaatttttttttttttcaaatgtgttaagtgtttaag |
35537228 |
T |
|
| Q |
301 |
aatcatacttactttctagttatttttccccgactcttgccgcgagatgcactctgcttcatgccattattcaatgcctttggaatcatatttttggctg |
400 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35537229 |
aatcatactt-ctttctagttatttttccccgactcttgccgcgagatgcactctgcttcatgccattattcaatgcctttggaatcatatttgtggctg |
35537327 |
T |
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| Q |
401 |
atgtctctcgaaccatatttgtgtttgatgagttgggaaccaccatctcagagatcgatgacttctgaaccaccgtct |
478 |
Q |
| |
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||||||||||||||||||||||||||||||| || |||||||||||||||| | |||||||||||||||||||||||| |
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| T |
35537328 |
atgtctctcgaaccatatttgtgtttgatgactttggaaccaccatctcagtgttcgatgacttctgaaccaccgtct |
35537405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 11 - 478
Target Start/End: Original strand, 35577195 - 35577665
Alignment:
| Q |
11 |
cacagaagcacaatcagaaaagatgagagtcattaaaaaaggtaaagcaaaaccgatctttaaccgaagctacctttccgtgagaatagtaagcaacttt |
110 |
Q |
| |
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|||| ||||||||||||||||||||| |||||| ||| |||||||| | |||| |||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
35577195 |
cacaaaagcacaatcagaaaagatgaaagtcataaaacaaggtaaaactgaacccatctttaaccaaagctacctttccatgagaatagtaagcaacttc |
35577294 |
T |
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| Q |
111 |
agctccatctagtaacaagtcttcttcaaataccaacttatgcaaccgtagatccctatcaaaataggatcaagaaaaagagaaaaatttaaattcctga |
210 |
Q |
| |
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|| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
35577295 |
agttccatcttctaacacgtcttcttcaaataccaacttatgcaaccgtagatccctatcaaaataggttcaagaaaaagagcaaaatttaaattcctgg |
35577394 |
T |
|
| Q |
211 |
taacactagaacaccgtg---tgttaatgc-------atataatatacatctaaatcagtaaattctaannnnnnnnnncaaatgtgttaagtgcttaag |
300 |
Q |
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| | |||||||| | ||| ||||||||| |||||||||||||||||||||||||||||||| ||||| | |||||||||||| |
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| T |
35577395 |
tgaaactagaacgctgtgtgttgttaatgcatataatatataatatacatctaaatcagtaaattctaatttttttttccaaatatattaagtgcttaa- |
35577493 |
T |
|
| Q |
301 |
aatcatacttactttctagttatttttccccgactcttgccgcgagatgcactctgcttcatgccattattcaatgcctttggaatcatatttttggctg |
400 |
Q |
| |
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| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
35577494 |
---aagacatactttctagttatttttccccgactcttgcc---agatgcactctgcttcatgccattattcaatgcctttggaatcatatttgtggatg |
35577587 |
T |
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| Q |
401 |
atgtctctcgaaccatatttgtgtttgatgagttgggaaccaccatctcagagatcgatgacttctgaaccaccgtct |
478 |
Q |
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||||||||||||||||||||||||||||||| || |||||||||||||||| | | ||||||||| |||||||||||| |
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| T |
35577588 |
atgtctctcgaaccatatttgtgtttgatgaatttggaaccaccatctcagtgtttgatgacttcggaaccaccgtct |
35577665 |
T |
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