View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20699_low_9 (Length: 342)
Name: NF20699_low_9
Description: NF20699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20699_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 19 - 324
Target Start/End: Complemental strand, 43814272 - 43813967
Alignment:
| Q |
19 |
gatgtgcctccttctatcgccaatgaaaagatgtctgtgaaacaaatgtcttggccagctcatgtttactacaaagcaaaagaggaagaatcgaaaactt |
118 |
Q |
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| T |
43814272 |
gatgtgcctccttctatcgccaatgaaaacatgtctgtgaaacaaatgtcttggccagctcatgtttactacaaagcaaaagaggaagaatcgaaaactt |
43814173 |
T |
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| Q |
119 |
atgaaagtgctagttcattgtctctaactacatttacatcacttttgattgaatttgtagcaaggcttcaaaatttggtggatgcatttgaagaattggg |
218 |
Q |
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| T |
43814172 |
atgaaagtgctagttcattgtctctaactacatttacatcacttttgattgaatttgtagcaaggcttcaaaatttggtggatgcatttgaagaattggg |
43814073 |
T |
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| Q |
219 |
tgagaaagctaactttaaggacccccttgaacaacaaagtgtggtaacctcgggtgggttttggaccagattatttaactgcttcaaatcctaggattga |
318 |
Q |
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| T |
43814072 |
tgagaaagctaactttaaggacccccttgaacaacaaagtgtggtaacctcgggtgggttttggaccagattatttaactgcttcaaatcctaggattga |
43813973 |
T |
|
| Q |
319 |
aaaatg |
324 |
Q |
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|||||| |
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| T |
43813972 |
aaaatg |
43813967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 32 - 324
Target Start/End: Complemental strand, 43821557 - 43821253
Alignment:
| Q |
32 |
ctatcgccaatgaaaagatgtctgtgaaacaaatgtcttggccagctcatgtttactacaaa------------gcaaaagaggaagaatcgaaaactta |
119 |
Q |
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|||| ||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
43821557 |
ctattgccaatgaaaacatgtttgtgaaacaaatgtcttggcctgctcatgtttactacaaaccagaagtcaaagcaaaagaggaagaatcaaaaactta |
43821458 |
T |
|
| Q |
120 |
tgaaagtgctagttcattgtctctaactacatttacatcacttttgattgaatttgtagcaaggcttcaaaatttggtggatgcatttgaagaattgggt |
219 |
Q |
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| T |
43821457 |
tgaaagtgcaagttcgttgtctctaacgacatttacatcacttctgatagaatttgtagcaaggcttcaaaatttagtggactcatttgaagaattgggt |
43821358 |
T |
|
| Q |
220 |
gagaaagctaactttaaggacccccttgaacaacaaagtgtggtaacctcgggtgggttttggaccagattatttaactgcttcaaatcctaggattgaa |
319 |
Q |
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||||||||||| |||||||||||||||||| ||||| | | ||| |||| || ||||||||||| ||||| ||||||| ||||| ||||||||||||| |
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| T |
43821357 |
gagaaagctaattttaaggacccccttgaaaaacaaggcgcggtggcctctggcgggttttggacaagattgtttaactacttcagatcctaggattgac |
43821258 |
T |
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| Q |
320 |
aaatg |
324 |
Q |
| |
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||||| |
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| T |
43821257 |
aaatg |
43821253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 19 - 324
Target Start/End: Complemental strand, 43829036 - 43828719
Alignment:
| Q |
19 |
gatgtgcctccttctatcgccaatgaaaagatgtctgtgaaacaaatgtcttggccagctcatgtttactacaaa------------gcaaaagaggaag |
106 |
Q |
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||||||||||||||||||||||||||||| |||| |||||||||| |||||||| |||||||||||||||||| ||||||||||||| |
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| T |
43829036 |
gatgtgcctccttctatcgccaatgaaaacatgttcgtgaaacaaacatcttggcctgctcatgtttactacaaaccagaagtcaaagcaaaagaggaag |
43828937 |
T |
|
| Q |
107 |
aatcgaaaacttatgaaagtgctagttcattgtctctaactacatttacatcacttttgattgaatttgtagcaaggcttcaaaatttggtggatgcatt |
206 |
Q |
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||| ||||||||||||||||| ||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
43828936 |
tatcaaaaacttatgaaagtgcaagttcgttgtctctaacgacatttacatcactattgattgaatttgtagcaaggcttcaaaatttagtggattcatt |
43828837 |
T |
|
| Q |
207 |
tgaagaattgggtgagaaagctaactttaaggacccccttgaacaacaaagtgtggtaacctcgggtgggttttggaccagattatttaactgcttcaaa |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||| || | || || ||||| ||| ||||| ||||||||||| | | |
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| T |
43828836 |
tgaagaattgggtgagaaagctaactttaaggacccccttgaacaacaaggtgccatagcatctggctggtttaggaggagattgtttaactgctttata |
43828737 |
T |
|
| Q |
307 |
tcctaggattgaaaaatg |
324 |
Q |
| |
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||| |||||||| ||||| |
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| T |
43828736 |
tcccaggattgacaaatg |
43828719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 95 - 255
Target Start/End: Original strand, 31809818 - 31809978
Alignment:
| Q |
95 |
caaaagaggaagaatcgaaaacttatgaaagtgctagttcattgtctctaactacatttacatcacttttgattgaatttgtagcaaggcttcaaaattt |
194 |
Q |
| |
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|||||| ||||||||| ||||| ||||||||||||||||| || || | | ||||| |||||||| ||||||||||||| || ||||| ||||| | |
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| T |
31809818 |
caaaagtggaagaatcaaaaacctatgaaagtgctagttcgttaactttggcaacattctcatcacttctgattgaatttgtggctaggctacaaaacct |
31809917 |
T |
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| Q |
195 |
ggtggatgcatttgaagaattgggtgagaaagctaactttaaggacccccttgaacaacaa |
255 |
Q |
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| T |
31809918 |
tgttgattcttttgaagaattaggtgagaaagcgaagtttaaggaccctcttgaacaacaa |
31809978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 202
Target Start/End: Original strand, 50245656 - 50245741
Alignment:
| Q |
117 |
ttatgaaagtgctagttcattgtctctaactacatttacatcacttttgattgaatttgtagcaaggcttcaaaatttggtggatg |
202 |
Q |
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||||||||||||||| || |||||| | |||||||| | |||||||| || || ||||| ||||| ||||||||| | ||||||| |
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| T |
50245656 |
ttatgaaagtgctagctctttgtctttggctacatttgcttcacttttaatcgagtttgttgcaagacttcaaaatcttgtggatg |
50245741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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