View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2069_high_1 (Length: 837)
Name: NF2069_high_1
Description: NF2069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2069_high_1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 743; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 743; E-Value: 0
Query Start/End: Original strand, 11 - 821
Target Start/End: Original strand, 35563647 - 35564462
Alignment:
| Q |
11 |
cagagactattctttgatcaacattctaactaattttgtccaaaataaaaatctaaccaatatgtttgcaaaataaatttaaacaacaaatgttagtatt |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35563647 |
cagagactattctttgatcaacattctaactaattttgtccaaaataaaaatctaaccaatatgtttgcaaaataaatttaaacaacaaatgttagtatt |
35563746 |
T |
|
| Q |
111 |
atttgcaaagaaattattaaatttgtctaaaaattggagatgggtttatttttcaaattctcattttgatagctaattattcttttaaaggaataattct |
210 |
Q |
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|||||||||||||||| ||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35563747 |
gtttgcaaagaaattatgaaatttgtctaaaaattagagacggatttatttttcaaattctcattttgatagctaattattcttttaaaggaattattct |
35563846 |
T |
|
| Q |
211 |
attattttaggtgtaacctactttaagaaaaaagggtgtgttagttcttctataactattgtttttactatttgtttcgtaatgttttggaactatgtca |
310 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35563847 |
attattttaggtgtaacctactttaagaaaaaagggtgtgttagttcttctataactattgtttttactatttgtttcgtaatgttttggaactatgtca |
35563946 |
T |
|
| Q |
311 |
cagtataaattgaaaatgacattttcttttatagaaatgaaagtgacgtattcataatatgaatggaatcatatcaatataatattg-----aaactttg |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
35563947 |
cagtataaattgaaaatgacattttcttttatagaaatgaaagtgacgtattcataatatgaatggaatcatatcaatataaaattgaaattaaactttg |
35564046 |
T |
|
| Q |
406 |
cacataaaatattgtcattaatatatattttattccatgttgatgttgcagnnnnnnntgagcattccggtaacaatttcacgtgtcttaaaatacatcc |
505 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
35564047 |
cacataaaatattgtcattaatatatattttattccatgttgatgttgcagaaaaaaatgagcattccggtaacaatttcacgtgtcttaaaatacatcc |
35564146 |
T |
|
| Q |
506 |
ctgatttacaaaagcaggtgcaaggacttactaagaaaaaagaagagcttctatcaagaatttctcatcgacaagaatatgcagttaacaaagaatcaca |
605 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35564147 |
ctgatttacaaaagcaggtgcaaggacttaccaagaaaaaagaagagcttctatcaagaatttctcatcgacaagaatatgcagttaacaaagaatcaca |
35564246 |
T |
|
| Q |
606 |
aaggaagaaaattccaaattacaattctgcttttgtagtttcaacaagtaggcttaatgatactgagcttgttattcatatttcgtcttatgaggccaac |
705 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35564247 |
aaggaagaaaattccaaattacaattctgcttttgtagtttcaacaagtaggcttaatgatactgagcttgttattcatatttcgtcttatgaggccaac |
35564346 |
T |
|
| Q |
706 |
aagattcctctatctgagatcttgatgtgtttagaaaataatggtcttcttctacttaactcttcttcttctaaaacctttggagggaggctcttctata |
805 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35564347 |
aagattcctctatctgagatcttgatgtgtttagaaaataatggtcttcttctacttaactcttcttcttctaaaacctttggagggaggctcttctata |
35564446 |
T |
|
| Q |
806 |
acttgcattttcaggt |
821 |
Q |
| |
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|||||||||||||||| |
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|
| T |
35564447 |
acttgcattttcaggt |
35564462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 9e-20; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 624 - 822
Target Start/End: Complemental strand, 18782641 - 18782443
Alignment:
| Q |
624 |
ttacaattctgcttttgtagtttcaacaagtaggcttaatgatactgagcttgttattcatatttcgtcttatgaggccaacaagattcctctatctgag |
723 |
Q |
| |
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|||||| |||| ||||||||||||||||||| |||| ||||||| ||| || ||||| ||||| | ||| | | |||||||||| || |||||| |
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| T |
18782641 |
ttacaactctggttttgtagtttcaacaagttggctcaatgatagtgaaattaccattcagatttcatgttacactgtccacaagattccactttctgag |
18782542 |
T |
|
| Q |
724 |
atcttgatgtgtttagaaaataatggtcttcttctacttaactcttcttcttctaaaacctttggagggaggctcttctataacttgcattttcaggtg |
822 |
Q |
| |
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|||||||||||||| |||||| |||| ||| | || ||||| |||||| ||| | |||||||||||||| |||||||||| |||||||| |||||| |
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| T |
18782541 |
atcttgatgtgtttggaaaatgatggccttttgctgcttaatctttcttcatctcagacctttggagggagagtcttctataatttgcatttccaggtg |
18782443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 706 - 822
Target Start/End: Complemental strand, 18792035 - 18791919
Alignment:
| Q |
706 |
aagattcctctatctgagatcttgatgtgtttagaaaataatggtcttcttctacttaactcttcttcttctaaaacctttggagggaggctcttctata |
805 |
Q |
| |
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|||||||| || |||||||||||||| ||||| |||||| |||| ||| | || ||||| |||||| || || ||||||||||||||| ||||||||| |
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| T |
18792035 |
aagattccactttctgagatcttgatttgtttggaaaatgatggccttttgctgcttaatgtttcttcatcaaagacctttggagggagggtcttctata |
18791936 |
T |
|
| Q |
806 |
acttgcattttcaggtg |
822 |
Q |
| |
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| |||||||| |||||| |
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| T |
18791935 |
atttgcatttccaggtg |
18791919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 624 - 822
Target Start/End: Complemental strand, 18803575 - 18803377
Alignment:
| Q |
624 |
ttacaattctgcttttgtagtttcaacaagtaggcttaatgatactgagcttgttattcatatttcgtcttatgaggccaacaagattcctctatctgag |
723 |
Q |
| |
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|||||| |||| ||||||||||||||||||| |||| ||||||| ||| ||| |||||| ||||| | ||| | | |||||||||| || |||||| |
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| T |
18803575 |
ttacaactctggttttgtagtttcaacaagttggctaaatgatagtgaagttgctattcagatttcatgttacactgtccacaagattccactttctgag |
18803476 |
T |
|
| Q |
724 |
atcttgatgtgtttagaaaataatggtcttcttctacttaactcttcttcttctaaaacctttggagggaggctcttctataacttgcattttcaggtg |
822 |
Q |
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|| ||| | |||||||||||| |||| || | | || || |||||| || |||||||||||| |||| ||||||| || || |||||||||||| |
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| T |
18803475 |
attttgctatgtttagaaaatgatggaattttgttgctaaatgtttcttcgtcgcaaacctttggagagaggatcttctacaatttacattttcaggtg |
18803377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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