View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2069_high_11 (Length: 257)
Name: NF2069_high_11
Description: NF2069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2069_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 10 - 239
Target Start/End: Complemental strand, 46151375 - 46151146
Alignment:
| Q |
10 |
agaagcaaaggacaaccagtggttttaaaacagaacccagcatcaatcgcataaacgttgagaaaattcgcaaatctgagcgaatccaatcacaaaacaa |
109 |
Q |
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|||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46151375 |
agaaacaaaggacagccggtggttttaaaacagaacccagcatcaatcgcataaacgttgagaaaattcgcaaatctgagcgaatccaatcacaaaacaa |
46151276 |
T |
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| Q |
110 |
gattcaaacccagaacgcagcttcaaggacaaaacacccctgatcctaaaacaaggcaaccaccgctagaaggaggagaacgagaccagaacaactccat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46151275 |
gattcaaacccagaacgcagcttcaaggacaaaacacccctgatcctaaaacaaggcaaccaccgctagaaggaggagaacgagaccagaacaactccat |
46151176 |
T |
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| Q |
210 |
tttccaatcaaaagataacagtgatagaac |
239 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
46151175 |
tttccaatcaaaagataacagtgatagaac |
46151146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 10 - 239
Target Start/End: Complemental strand, 45991487 - 45991263
Alignment:
| Q |
10 |
agaagcaaaggacaaccagtggttttaaaacagaacccagcatcaatcgcataaacgttgagaaaattcgcaaatctgagcgaatccaatcacaaaacaa |
109 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
45991487 |
agaaacaaaggacaaccagtggttttaaaacagaacccagcatcaatcgcagaaacgttgagaaaattcgcaaatctgagcgaatccaatcacaacaca- |
45991389 |
T |
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| Q |
110 |
gattcaaacccagaacgcagcttcaaggacaaaacacccctgatcctaaaacaaggcaaccaccgctagaaggaggagaacgagaccagaacaactccat |
209 |
Q |
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|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
45991388 |
----caaacccagaacgcagcttcaaggacaaaacaacccttatcctaaaacaaggcaaccaccgctagaaggaggagaacgagattagaacaactccat |
45991293 |
T |
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| Q |
210 |
tttccaatcaaaagataacagtgatagaac |
239 |
Q |
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||||||||||||||||| |||||||||||| |
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| T |
45991292 |
tttccaatcaaaagatatcagtgatagaac |
45991263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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