View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2069_high_9 (Length: 308)
Name: NF2069_high_9
Description: NF2069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2069_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 135 - 293
Target Start/End: Original strand, 16590045 - 16590203
Alignment:
| Q |
135 |
tcttacaacattgttcctttcatttcttcatatttaaaatcacttgatccatcttccggtctattcaggattgggagctttttgtttcttcgagcatgaa |
234 |
Q |
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| T |
16590045 |
tcttacaacattattcctttcatttcttcatatttaaaatcacttgatccatcttcccgtccattcaggattgggagctttttgtttcttcgagtacgaa |
16590144 |
T |
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| Q |
235 |
gtggattctttcgattatcttcctttctttctgccatatataacataaagagaatatat |
293 |
Q |
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| T |
16590145 |
gtggattctttcgattatcttcctctctttctgccatatataacataaagagaatatat |
16590203 |
T |
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Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 16589929 - 16589982
Alignment:
| Q |
19 |
atacaccaattagagcaatctcttctcaaaacttatatcttagatttctcttac |
72 |
Q |
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| T |
16589929 |
atacaccaattagagcaatgtcttctcaaaacttatatcttagatttctcttac |
16589982 |
T |
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