View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2069_low_4 (Length: 578)
Name: NF2069_low_4
Description: NF2069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2069_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 10 - 560
Target Start/End: Complemental strand, 46795898 - 46795351
Alignment:
| Q |
10 |
aggagcagagaagctaccactgtgttgaattgtgatcttttccacacaatacctagggttttcaaccattggttccaaatgttctctttccctaataatt |
109 |
Q |
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| T |
46795898 |
aggagcagagaagctaccactgtgttgaattgtgatcttttccacacaatacctagggttttcaaccattggttccaaatgttctctttccctaataatt |
46795799 |
T |
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| Q |
110 |
tcccttcttcatcatcttcttcttcttaccctaatagtaccctttcttttctcattgacaatcctgaaaataatgattttccaaataacaatactactct |
209 |
Q |
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| T |
46795798 |
tcccttcttcatcatcttcttcttcttaccctaatagtaccctttcttttctcattgacaatcctgaaaataatgattttccaaataacaatactactct |
46795699 |
T |
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| Q |
210 |
tcttgatgattcactactttctattcctttcactacatcaacacatcatgatgttgttccattccctgatgctaattttgcagattgtaacaacactgca |
309 |
Q |
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| T |
46795698 |
tcttgatgattcactactttctattcctttcac---atcaacacatcatgatgttgttccattccctgatactaattttgcagattgtaacaacactgca |
46795602 |
T |
|
| Q |
310 |
atgtttgaacaagataatggctacaactttggtgttactagtagttttccaattccaaattttgttgtgacagagcagaaacaaccagcaacagttatag |
409 |
Q |
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| T |
46795601 |
atgtttgaacaagataatggctacaactttggtgttactagtagttttccaattccaaattttgttgtgacagagcagaaacaaccagcaacagttatag |
46795502 |
T |
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| Q |
410 |
gaggaaagaaagataggcacagtaagattcacacatcacagggtttgagagacagaagggtaagattgtcaagtgaaatagcaagaaagttctttgatct |
509 |
Q |
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| T |
46795501 |
gaggaaagaaagataggcacagtaagattcacacatcacagggtttgagagacagaagggtaagattgtcaagtgaaatagcaagaaagttctttgatct |
46795402 |
T |
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| Q |
510 |
tcaagatatgttagagtttgacaaaccaagtaacacacttgagtggctttt |
560 |
Q |
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| T |
46795401 |
tcaagatatgttagagtttgacaaaccaagtaacacacttgagtggctttt |
46795351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 415 - 557
Target Start/End: Original strand, 6032037 - 6032179
Alignment:
| Q |
415 |
aagaaagataggcacagtaagattcacacatcacagggtttgagagacagaagggtaagattgtcaagtgaaatagcaagaaagttctttgatcttcaag |
514 |
Q |
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| T |
6032037 |
aagaaagacaggcatagcaagattcacacatctcaagggttgagagacagaagggtgagactttccatcgagatcgcgaggaagttcttcgatcttcaag |
6032136 |
T |
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| Q |
515 |
atatgttagagtttgacaaaccaagtaacacacttgagtggct |
557 |
Q |
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| T |
6032137 |
acatgttagggtttgacaaagcaagcaacacacttgaatggct |
6032179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 494 - 560
Target Start/End: Original strand, 6711250 - 6711316
Alignment:
| Q |
494 |
gaaagttctttgatcttcaagatatgttagagtttgacaaaccaagtaacacacttgagtggctttt |
560 |
Q |
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| T |
6711250 |
gaaagttcttcgatcttcaagacatgttagggtttgacaaagctagcaacacacttgattggctttt |
6711316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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