View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2069_low_7 (Length: 373)
Name: NF2069_low_7
Description: NF2069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2069_low_7 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 13 - 373
Target Start/End: Complemental strand, 1801312 - 1800952
Alignment:
| Q |
13 |
aatatagaatacagtcttgatcatggttatatatgtttatggtactttataattttctgagttttaattttaattgtggaagtctattgtcacatttgtt |
112 |
Q |
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| T |
1801312 |
aatatagaatacagtcttgatcatggttatatatgtttatggtactttataattttctgagttttaattttaattgtggaagtctattgtcacatttgtt |
1801213 |
T |
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| Q |
113 |
tctaatttatctcattttgttttattgccgtatagaattccactcgacagggagaatcccaattattcttctcaaatgggataaataatcctccaactgc |
212 |
Q |
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| T |
1801212 |
tctaatttatctcattttgttttattgccgtatagaattccactcgacagggagaatcccaattattcttctcaaatgggataaataatcctccaactgc |
1801113 |
T |
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| Q |
213 |
ctcattgtggggacccaaaatcatgtcatctaatctatatcaattatctcctcatgaggtaannnnnnncattgtttgattgaaattaaggtaaataatt |
312 |
Q |
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| T |
1801112 |
ctcattgtggggacccaaaatcatgtcatctaatctatatcaattatctcctcatgaggtaatttttttcattgtttgattgaaattaaggtaaataatt |
1801013 |
T |
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| Q |
313 |
ttatatactgaatatatattatagttgatgtccatgcatattctacattttgatgttaaca |
373 |
Q |
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| T |
1801012 |
ttatatactgaatatatattatagttgatgtccatgcatattctacattttgatgttaaca |
1800952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 58 - 150
Target Start/End: Complemental strand, 1777188 - 1777098
Alignment:
| Q |
58 |
tttataattttctgagttttaattttaattgtggaagtctattgtcacatttgtttctaatttatctcattttgttttattgccgtatagaat |
150 |
Q |
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| T |
1777188 |
tttagaattttctgagttttaattttaattttggaagcttattttcaca--tgtttttaatttgtctcattttgttttattgcctcatagaat |
1777098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 150
Target Start/End: Complemental strand, 1783897 - 1783810
Alignment:
| Q |
67 |
ttctgagttttaattttaattgtggaagtctattgtcaca----tttgtttctaatttatctcattttgttttattgccgtatagaat |
150 |
Q |
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| T |
1783897 |
ttctgagttttaattttaattgtggaagcttattgtcacatctttttttttttaatttgcctcattttattttattgcctcatagaat |
1783810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 63 - 274
Target Start/End: Original strand, 25728349 - 25728561
Alignment:
| Q |
63 |
aattttctgagttttaattttaattgtggaagtctattgtcacatttgtttctaatttatctcattttgttttattgccg--tatagaattccactcgac |
160 |
Q |
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| T |
25728349 |
aattctctgagtttgaatttttattgttgaagcctattgtgacatttatttttaatttgtctcattttgtttt-ttgccgcatatagtataccactagac |
25728447 |
T |
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| Q |
161 |
agggagaatcccaattattcttctcaaatgggataaataatcctccaactgcctcattgtggggacccaaaatcatgtcatctaatctatatcaattatc |
260 |
Q |
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| T |
25728448 |
agggaacatcccagttattcttctttaatgggacaaataatcctccaactgcctcgttgtttggacccaaactcttggcagctcatctatatcaattatc |
25728547 |
T |
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| Q |
261 |
tcctcatgaggtaa |
274 |
Q |
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| T |
25728548 |
gcctcatgaggtaa |
25728561 |
T |
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