View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2069_low_8 (Length: 348)
Name: NF2069_low_8
Description: NF2069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2069_low_8 |
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| [»] scaffold0005 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 17 - 348
Target Start/End: Original strand, 227749 - 228080
Alignment:
| Q |
17 |
accaatgcaaaacctaaccctatttttccaattagtgtagcaacaccatttagtttcacctgaagaggtgtctcatcatctccaccttcattcaaggttt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
227749 |
accaatgcaaaacctaaccctatttttccaattagtgtagcaacaccatttagtttcacctgaagaggtgtctcatcatctccgccttcattcaaagttt |
227848 |
T |
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| Q |
117 |
ccatcaatcttccccattccgtcttcataccaaccgaagtcacgagcatcttagcagaaccatcttgaactgtggttccacatagaagaaatggcttttg |
216 |
Q |
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| T |
227849 |
ccatcaatcttccccattccgtcttcataccaaccgaagtcacgagcatcttagcagaaccatcttgaactgtggttccacatagaagaaatggcttttg |
227948 |
T |
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| Q |
217 |
ttgatcaacatttacggcttcactctcaccggataaacttgattcatcgatcaataaactaaaacctgatatatataatccatctgcaggaactatgtct |
316 |
Q |
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| T |
227949 |
ttgatcaacatttacggcttcactctcaccggataaacttgattcatcgatcaataaactaaatcctgatatatataatccatctgcaggaactatgtct |
228048 |
T |
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| Q |
317 |
ccgattgcgagatgaactatatctccaactac |
348 |
Q |
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| T |
228049 |
ccgattgcgagatgaactatatctccaactac |
228080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 17 - 348
Target Start/End: Complemental strand, 14589629 - 14589298
Alignment:
| Q |
17 |
accaatgcaaaacctaaccctatttttccaattagtgtagcaacaccatttagtttcacctgaagaggtgtctcatcatctccaccttcattcaaggttt |
116 |
Q |
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| T |
14589629 |
accaatgcaaaacctaaccctatttttccaattagtgtagcaacaccatttagtttcacctgaagaggtgtctcatcatctccgccttcattcaaagttt |
14589530 |
T |
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| Q |
117 |
ccatcaatcttccccattccgtcttcataccaaccgaagtcacgagcatcttagcagaaccatcttgaactgtggttccacatagaagaaatggcttttg |
216 |
Q |
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| T |
14589529 |
ccatcaatcttccccattccgtcttcataccaaccgaagtcacgagcatcttagcagaaccatcttgaactgtggttccacatagaagaaatggcttttg |
14589430 |
T |
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| Q |
217 |
ttgatcaacatttacggcttcactctcaccggataaacttgattcatcgatcaataaactaaaacctgatatatataatccatctgcaggaactatgtct |
316 |
Q |
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| T |
14589429 |
ttgatcaacatttacggcttcactctcaccggataaacttgattcatcgatcaataaactaaatcctgatatatataatccatctgcaggaactatgtct |
14589330 |
T |
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| Q |
317 |
ccgattgcgagatgaactatatctccaactac |
348 |
Q |
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| T |
14589329 |
ccgattgcgagatgaactatatctccaactac |
14589298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 43464229 - 43464294
Alignment:
| Q |
27 |
aacctaaccctatttttccaattagtgtagcaacaccatttagttt-cacctgaagaggtgtctca |
91 |
Q |
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| T |
43464229 |
aacctaatcctgttttcccgataagtgtagcaacaccatttagtttaaacctgcagaggtgtctca |
43464294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 150
Target Start/End: Complemental strand, 37756898 - 37756786
Alignment:
| Q |
38 |
atttttccaattagtgtagcaacaccatttagtttcacctgaagaggtgtctcatcatctccaccttcattcaaggtttccatcaatcttccccattccg |
137 |
Q |
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| T |
37756898 |
attttaccaattatagtagcaactccattcaatttaacctgcaatggagtctcatcctctcccccctcgtttagagtttccatcaattttccccattcag |
37756799 |
T |
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| Q |
138 |
tcttcataccaac |
150 |
Q |
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| T |
37756798 |
tcctcataccaac |
37756786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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