View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2069_low_9 (Length: 316)
Name: NF2069_low_9
Description: NF2069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2069_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 11 - 293
Target Start/End: Complemental strand, 21085499 - 21085215
Alignment:
| Q |
11 |
cataggtagtggattcaagtcacttcattcttataaatctggatactttggtgctgcaattaagcttcatcctggctatactgctggagttattacttcc |
110 |
Q |
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| T |
21085499 |
cataggtagtggattcaagtcacttcattcttataaatccggatactttggtgctgcaattaagcttcatcctggctatactgctggagttattacttct |
21085400 |
T |
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| Q |
111 |
ctctatgtaagtttgactaatgttgaaaatca----ttctccgtctcacgatatacgtcattttagtaaacaaaaacgtcgtctcattttttatgtcatt |
206 |
Q |
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| T |
21085399 |
ctctatgtgagtttgactaatgttgaaaatcaccacttctccgtctcacgatatacgtcattttagtaaacaaaaacgtcgtctca--ttttatgtcatt |
21085302 |
T |
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| Q |
207 |
tcagcgggaaaaatttccgcaaaaaatatttaattttatctgtctcttaattcgtataaaatttaataaaacgacttatattgtgag |
293 |
Q |
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| T |
21085301 |
tcagcgggaaaaatttccgcaaaaaatatttaattttatctatctcttaattcgtataaaatttaataaaacgacttatattgtgag |
21085215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 40870799 - 40870881
Alignment:
| Q |
18 |
agtggattcaagtcacttcattcttataaatctggatactttggtgctgcaattaagcttcatcctggctatactgctggagt |
100 |
Q |
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| T |
40870799 |
agtggattcaagtcatatcactcttataaatctggatattttggtactgcggttaagcttcaaccaggttatactgcaggagt |
40870881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 121
Target Start/End: Original strand, 41268739 - 41268813
Alignment:
| Q |
47 |
atctggatactttggtgctgcaattaagcttcatcctggctatactgctggagttattacttccctctatgtaag |
121 |
Q |
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| T |
41268739 |
atctggctactttggtgcttccattaagcttcaacctggttatactgcaggagttataacatctttctatgtaag |
41268813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 27685840 - 27685788
Alignment:
| Q |
51 |
ggatactttggtgctgcaattaagcttcatcctggctatactgctggagttat |
103 |
Q |
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| T |
27685840 |
ggatactttggcgcttcgattaagcttcatcctggctacactgcaggagttat |
27685788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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