View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20700_high_1 (Length: 552)
Name: NF20700_high_1
Description: NF20700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20700_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 85 - 332
Target Start/End: Complemental strand, 22390945 - 22390698
Alignment:
| Q |
85 |
atcacatcagtttgcaagggaaaatattcaattgtacctcttcataggtcattctttatgtgtaatattcaagattacaagtcactagcaacaaactcat |
184 |
Q |
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| T |
22390945 |
atcacattaatttgcaagggaaaatattcaattgtacctcttcataggtcattctttatgtgtaatattcaagattacaagtcactagtaacaaactcat |
22390846 |
T |
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| Q |
185 |
gtgttgtcaacttctatacacatttcattattctagtttgcttttgatagcatacttaccaatatttgaccattaggtatggtaaatgtaaccatatggt |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22390845 |
gtgttgtcaacttctatacacatttcattattctagtttgcttttgatagcatacttaccaatatttgaccattaggtatggtaaatgtaaccatatggt |
22390746 |
T |
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| Q |
285 |
caaattataatcatgtacaaatcacccaaacctttacctggtttaggg |
332 |
Q |
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| T |
22390745 |
caaattataatcatgtacaaatcacccaaacctttacctggtttaggg |
22390698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 396 - 537
Target Start/End: Complemental strand, 22390636 - 22390495
Alignment:
| Q |
396 |
caacttttagcataactacactaaatctttctgaagactgtatacttctgcagcagtgtaacttgnnnnnnnnnnnnnnnnnnnnnnaatatgtaagaag |
495 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
22390636 |
caacttttagcataactacactaaatctttttgaagactgtatacttctgcagcagtgtaacttgttcttcttcttcttctttcttcaatatgtaagaag |
22390537 |
T |
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| Q |
496 |
gttcacattgatttaaattgatgcttgcattgttgttgagac |
537 |
Q |
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| T |
22390536 |
gttcacattgatttaaattgatgcttgcattgttgttgagac |
22390495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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