View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20700_low_2 (Length: 376)
Name: NF20700_low_2
Description: NF20700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20700_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 355
Target Start/End: Complemental strand, 47919001 - 47918664
Alignment:
| Q |
18 |
atcaacaccggtcatgtcaataagctttgcatcatcaacatgtccaataagaggttcgtcacttggaggtttcaacagcacctgcaaaatatcattcatc |
117 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47919001 |
atcaacaccggtcatgtcaataagctttgcattatcaacatgtccaataagaggttcgtcacttggaggtttcaacagcacctgcaaaatatcattcatc |
47918902 |
T |
|
| Q |
118 |
agacatcagttattcattctcatctccccaagaataaacttaacttctaggacctacttagcatttctttttaaagagtttgcaaccgcaatctaggctg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47918901 |
agacatcagttattcattctcatctccccaagaataaacttaacttctaggacctacttagcatttctttttaaagagtttgcaaccgcaatctaggctg |
47918802 |
T |
|
| Q |
218 |
tgacatcaatgttttaatattcatgtctttgcaactgcgaccacaatggaatgtataagccgcatttgacagattcaatggaccaaagaatataacaagt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47918801 |
tgacatcaatgttttaatattcatgtctttgcaactgcgaccacaatggaatgtataagccgcatttgacagattcaatggaccaaagaatataacaagt |
47918702 |
T |
|
| Q |
318 |
ctggaacaaaagaatacaccggcaataaaaaagagttt |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
47918701 |
ctggaacaaaagaatacaccggcaataaaaaagagttt |
47918664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 286 - 349
Target Start/End: Complemental strand, 6932600 - 6932537
Alignment:
| Q |
286 |
acagattcaatggaccaaagaatataacaagtctggaacaaaagaatacaccggcaataaaaaa |
349 |
Q |
| |
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||||||||||| ||| |||||||||| ||||||||||||||||||||| | |||||||||||| |
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| T |
6932600 |
acagattcaattgactaaagaatataccaagtctggaacaaaagaatatattggcaataaaaaa |
6932537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 29918229 - 29918330
Alignment:
| Q |
18 |
atcaacaccggtcatgtcaataagctttgcatcatcaacatgtccaataagaggttcgtcacttggaggtttcaacagcacctgcaaaatatcattcatc |
117 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
29918229 |
atcaacatcggtcaggtcaataagctttgcatcatcagcatttccaataagaggttcgtcacttggaggtttcagcatcacctgcaaaatatcattcatc |
29918328 |
T |
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| Q |
118 |
ag |
119 |
Q |
| |
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|| |
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|
| T |
29918329 |
ag |
29918330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 228 - 347
Target Start/End: Original strand, 29918375 - 29918494
Alignment:
| Q |
228 |
gttttaatattcatgtctttgcaactgcgaccacaatggaatgtataagccgcatttgacagattcaatggaccaaagaatataacaagtctggaacaaa |
327 |
Q |
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|
||||| ||||| |||||||||||||||||||| ||||||| || ||||||||||||| |||||||||||||| ||| | ||||||||||||||||||| |
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| T |
29918375 |
gtttttatattgatgtctttgcaactgcgaccgcaatggattgcataagccgcatttaacagattcaatggattaaaccagataacaagtctggaacaaa |
29918474 |
T |
|
| Q |
328 |
agaatacaccggcaataaaa |
347 |
Q |
| |
|
|||||||| ||||||||||| |
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|
| T |
29918475 |
agaatacatcggcaataaaa |
29918494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 286 - 349
Target Start/End: Complemental strand, 508662 - 508599
Alignment:
| Q |
286 |
acagattcaatggaccaaagaatataacaagtctggaacaaaagaatacaccggcaataaaaaa |
349 |
Q |
| |
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||||||||||| ||| |||||||||| ||||||||||||||||||||| | |||||||||||| |
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|
| T |
508662 |
acagattcaattgactaaagaatataccaagtctggaacaaaagaatatattggcaataaaaaa |
508599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 26291271 - 26291210
Alignment:
| Q |
288 |
agattcaatggaccaaagaatataacaagtctggaacaaaagaatacaccggcaataaaaaa |
349 |
Q |
| |
|
||||||||| ||| |||||||||| ||||||||||||||||||||| | |||||||||||| |
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|
| T |
26291271 |
agattcaattgactaaagaatataccaagtctggaacaaaagaatatattggcaataaaaaa |
26291210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 333
Target Start/End: Complemental strand, 18290981 - 18290936
Alignment:
| Q |
288 |
agattcaatggaccaaagaatataacaagtctggaacaaaagaata |
333 |
Q |
| |
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||||||||| ||| |||||||||||||||| ||||||||||||||| |
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| T |
18290981 |
agattcaattgactaaagaatataacaagtttggaacaaaagaata |
18290936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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