View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20700_low_4 (Length: 251)
Name: NF20700_low_4
Description: NF20700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20700_low_4 |
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| [»] scaffold0166 (3 HSPs) |
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Alignment Details
Target: scaffold0166 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: scaffold0166
Description:
Target: scaffold0166; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 20421 - 20214
Alignment:
| Q |
18 |
ggtaatgtcatgatttttatcttctcctagtattattgtaaattgtactgttcttgtagtatttaagtgaaatcttttagctgtttgttaatagtacagt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
20421 |
ggtaatgtcatgatttttatcttctcctagtattattgtaaattgtactgttcttgtagtatttatgtgaaatctttgagctgtttgttaatagtacagt |
20322 |
T |
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| Q |
118 |
tatggtttgtgtgttttcgtgttaatattcagttttgctatgacttatgaataaggtaatgggactaactcggttgattgttagtagcacaagttgacaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20321 |
tatggtttgtgtgttttcgtgttaatattcagttttgctatgac-tatgaataaggtaatgggactaactcggttgattgttagtagcacaagttgacaa |
20223 |
T |
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| Q |
218 |
tttttcttt |
226 |
Q |
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||||||||| |
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| T |
20222 |
tttttcttt |
20214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0166; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 99 - 174
Target Start/End: Original strand, 34056 - 34131
Alignment:
| Q |
99 |
tgtttgttaatagtacagttatggtttgtgtgttttcgtgttaatattcagttttgctatgacttatgaataaggt |
174 |
Q |
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|||||||||||||||| |||| | |||| ||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
34056 |
tgtttgttaatagtactgttaagatttgcgtgttttcgtgttaatattcagttttgctttgacttgtgaataaggt |
34131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0166; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 20195 - 20154
Alignment:
| Q |
210 |
gttgacaatttttcttttgtactaaatccagagaatattggt |
251 |
Q |
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| T |
20195 |
gttgacaatttttcttttgtactaaatctagagaatattggt |
20154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 24778038 - 24777831
Alignment:
| Q |
18 |
ggtaatgtcatgatttttatcttctcctagtattattgtaaattgtactgttcttgtagtatttaagtgaaatcttttagctgtttgttaatagtacagt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
24778038 |
ggtaatgtcatgatttttatcttctcctagtattattgtaaattgtactgttcttgtagtatttatgtgaaatctttgagctgtttgttaatagtacagt |
24777939 |
T |
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| Q |
118 |
tatggtttgtgtgttttcgtgttaatattcagttttgctatgacttatgaataaggtaatgggactaactcggttgattgttagtagcacaagttgacaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24777938 |
tatggtttgtgtgttttcgtgttaatattcagttttgctatgac-tatgaataaggtaatgggactaactcggttgattgttagtagcacaagttgacaa |
24777840 |
T |
|
| Q |
218 |
tttttcttt |
226 |
Q |
| |
|
||||||||| |
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|
| T |
24777839 |
tttttcttt |
24777831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 99 - 174
Target Start/End: Original strand, 24650601 - 24650676
Alignment:
| Q |
99 |
tgtttgttaatagtacagttatggtttgtgtgttttcgtgttaatattcagttttgctatgacttatgaataaggt |
174 |
Q |
| |
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|||||||||||||||| |||| | |||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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|
| T |
24650601 |
tgtttgttaatagtactgttaagatttgtgtgttttcgtgttaatattcagttttgctttgacttgtgaataaggt |
24650676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 99 - 174
Target Start/End: Original strand, 24791673 - 24791748
Alignment:
| Q |
99 |
tgtttgttaatagtacagttatggtttgtgtgttttcgtgttaatattcagttttgctatgacttatgaataaggt |
174 |
Q |
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|||||||||||||||| |||| | |||| ||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
24791673 |
tgtttgttaatagtactgttaagatttgcgtgttttcgtgttaatattcagttttgctttgacttgtgaataaggt |
24791748 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 24777812 - 24777771
Alignment:
| Q |
210 |
gttgacaatttttcttttgtactaaatccagagaatattggt |
251 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| |
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| T |
24777812 |
gttgacaatttttcttttgtactaaatctagagaatattggt |
24777771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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