View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20701_high_10 (Length: 337)
Name: NF20701_high_10
Description: NF20701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20701_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 330
Target Start/End: Complemental strand, 48956640 - 48956335
Alignment:
| Q |
18 |
aactatagccgtgaaatcctccttcttcgtatacctactccgcccccc--actcaataatactcattcattctccaaaagaaaaggaaattaaaggagca |
115 |
Q |
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| T |
48956640 |
aactatagccgtgaaatcctccttcttcgtatacctactccgccccccccactcaataatactcattcattctccaaaagaaaaggaaa-----ggagca |
48956546 |
T |
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| Q |
116 |
ctcactcattaactgtattcatagttgacttgacttattcaaaaagagagaatgagagcgacgtggtgattatatataagcataataaataaataatgta |
215 |
Q |
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| T |
48956545 |
ctcactcattaactgtattcatagttgacttgacttattcaaaaagagagaatgagagcgacgtggtgattatatataagcataataaataa----tgca |
48956450 |
T |
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| Q |
216 |
catcaattagtgatgaattatgtttaagaaagtgatttggtgtgttatgtttcactatttatttgagtcagtggaatggacaaaaaactgtaaaggctgc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48956449 |
catcaattagtgatgaattatgtttaagaaagtgatttggtgtgttatgtttcactatttatttgagtcagtggaatggacaaaaaactgtaaaggctgc |
48956350 |
T |
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| Q |
316 |
ttcttccttcatctc |
330 |
Q |
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||||||||||||||| |
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| T |
48956349 |
ttcttccttcatctc |
48956335 |
T |
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