View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20701_high_13 (Length: 246)
Name: NF20701_high_13
Description: NF20701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20701_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 14 - 191
Target Start/End: Complemental strand, 52243369 - 52243189
Alignment:
| Q |
14 |
attatttgttgccaaatcaatttggcgtttgttactgnnnnnnnngtcattaaacatacatacattttccggtataatttggctttttcctggaaaccac |
113 |
Q |
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| T |
52243369 |
attatttgttgccaaatcaatttggcgtttgttactgttttttttgtcattaaacatacatacattttccggtataatttggctttttcctggaaaccac |
52243270 |
T |
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| Q |
114 |
aatgtt---gtattctgtttctgtacgcttcctatctttcgttgtcctatcaggaatcacatgagacagcttcaaggatac |
191 |
Q |
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| T |
52243269 |
aatgttattgtattctgtttttgtacgcttcctatctttcgttgtcctatcaggaatcacatgagacagcttgaaggatac |
52243189 |
T |
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