View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20701_high_2 (Length: 462)
Name: NF20701_high_2
Description: NF20701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20701_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 446
Target Start/End: Complemental strand, 7633560 - 7633093
Alignment:
| Q |
1 |
ataaatattcaaaaaagaatactttgattactaccaatctcaacaaacgagaaaattgcacgtttcctcactaaacagctagcatcacccaagtttcatt |
100 |
Q |
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| T |
7633560 |
ataaatattcaaaaaagaatactttgattactaccaatctcaacaaatgagaaaattgcacgtttcctcactaaacagctagcatcacccaagtttcatt |
7633461 |
T |
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| Q |
101 |
cttttgtgtccaagttgggcatgataaacatctatcatgctccagcttgtgggagaatattaaaagacataaaactgaagaacnnnnnnnnnntctcctt |
200 |
Q |
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| T |
7633460 |
cttttgtgtccaagttgggcatgataaacatctatcatgctccagcttgtgcgagaatattgaaagacataaaactgaagaacaaaaaaaaaatctcctt |
7633361 |
T |
|
| Q |
201 |
tcattaagattacttgcgtagaaagtaactacactaactaccattaagattatttacgcagaaagttaatttaaagttgcgagttacgttacgtgtnnnn |
300 |
Q |
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| T |
7633360 |
tcattaagattacttgcgtagaaagtaactacactaactaccattaagattatttacgcagaaagttaatttaaagttgtgagttacattacgtgtaaaa |
7633261 |
T |
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| Q |
301 |
nnntgttctaaggtgtataaagagtgatccaaacatacaataagtg----------------------atatatatatagggtgagataagtgagtacca |
378 |
Q |
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| T |
7633260 |
aaatgttctaaggtgtataaagagtgatccaaacatacaataagtgatatatatatatatatatatatatatatatatagggtgagataagtgactacca |
7633161 |
T |
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| Q |
379 |
cataagannnnnnncacacaagtcattttctctcatatttcgtcacgggaggaaagattataagaata |
446 |
Q |
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| T |
7633160 |
cataagattttttccacacaagtcattttctctcatatttcgtcacgggagggaagattataagaata |
7633093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 2998891 - 2998954
Alignment:
| Q |
98 |
attcttttgtgtccaagttgggcatgataaacatctatcatgctccagcttgtgggagaatatt |
161 |
Q |
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| T |
2998891 |
attcttttgtatccaagcttggaatgataaatatttatcatgctccagcttgtgggaggatatt |
2998954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 33462028 - 33462091
Alignment:
| Q |
98 |
attcttttgtgtccaagttgggcatgataaacatctatcatgctccagcttgtgggagaatatt |
161 |
Q |
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| T |
33462028 |
attcttttgtatccaagcttggaatgataaatatttatcatgctccagcttgtgggaggatatt |
33462091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 34826185 - 34826248
Alignment:
| Q |
98 |
attcttttgtgtccaagttgggcatgataaacatctatcatgctccagcttgtgggagaatatt |
161 |
Q |
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| T |
34826185 |
attcttttgtatccaagcttggaatgataaatatttatcatgctccagcttgtgggaggatatt |
34826248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 155
Target Start/End: Complemental strand, 25419113 - 25419069
Alignment:
| Q |
111 |
caagttgggcatgataaacatctatcatgctccagcttgtgggag |
155 |
Q |
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| T |
25419113 |
caagttgggaatgataaacatataccatgctctagcttgtgggag |
25419069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 37194465 - 37194528
Alignment:
| Q |
98 |
attcttttgtgtccaagttgggcatgataaacatctatcatgctccagcttgtgggagaatatt |
161 |
Q |
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| T |
37194465 |
attcttttgtatccaagcttggaatgataaatatttatcatgctccagcttgtgggaggatatt |
37194528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 46142834 - 46142886
Alignment:
| Q |
109 |
tccaagttgggcatgataaacatctatcatgctccagcttgtgggagaatatt |
161 |
Q |
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| T |
46142834 |
tccaagcttggcatgatcaacatttatcatgctccaacttgtgggaggatatt |
46142886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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