View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20701_high_6 (Length: 375)
Name: NF20701_high_6
Description: NF20701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20701_high_6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 16 - 375
Target Start/End: Original strand, 10384880 - 10385239
Alignment:
| Q |
16 |
atgaaacaacatctttatattccatttcttcaaacagacactcagaatcagaagagtttatgtcaccacacttagcatacatgttaataagagcattaca |
115 |
Q |
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| T |
10384880 |
atgaaacaacatctttatattccatttcttcaaacagacactcagaatcagaagagtttacgtcaccacacttagcatacatgttaataagagcattaca |
10384979 |
T |
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| Q |
116 |
taaactaatatccacaagcatcccagattttatactcacacaatgaattacccttccttgaccaaagtttttcaagtgtgacaaagttgacaccacaagc |
215 |
Q |
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| T |
10384980 |
taaactaatatccacaagcatcccagattttatactcacacaatgaattacccttccttgaccaaagtttttcaagtgtgacaaagttgacaccacaagc |
10385079 |
T |
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| Q |
216 |
aatagagtggtggaatcaaacctagtttggtccttgatcattttccgaaagaactccactgctgtcctatagcatttgttttcgagcgatgccgaaataa |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10385080 |
aatagagtggtggaatcaaacctagtttggtccttgatcattttctgaaagaactccactgctgtcctatagcatttgttttcgagcgatgccgaaataa |
10385179 |
T |
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| Q |
316 |
tagcattccaagcaatcacatctctgttgtgaatgtcttcaaataaaaccctagatgaag |
375 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
10385180 |
tagcattccaagcaatcacatctctgttgtgaatgtgttcaaataaaaccctagatgaag |
10385239 |
T |
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