View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20701_high_7 (Length: 345)
Name: NF20701_high_7
Description: NF20701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20701_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 38120906 - 38120570
Alignment:
| Q |
1 |
tagcatgattctatttatagtaagtgtgatatcatgatgaatatgattggtggctaaccttcaattgcaaaacggtaacttaacaaagaagttgaagctg |
100 |
Q |
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| T |
38120906 |
tagcatgattctatttatagtaagtgtgatatcatgatgaatatgattggtggctaaccttcaattgcaaaacggtaacttaacaaagaagttgaagctg |
38120807 |
T |
|
| Q |
101 |
aaccgaaaccaactcctttagtataaataagacacaataataatatcacatttgcctcttcaaatgtttacttttcttgcagtggttacaaaacgtttag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38120806 |
aaccgaaaccaactcctttagtataaataagacacaataataatatcacatttgcctcttcaaatgtttacttttcttgcagtggttacaaaacgtttag |
38120707 |
T |
|
| Q |
201 |
nnnnnnnaataatagttgcattgcatagtcatgagtatcattagcacaactttggtattaattaacatagttattctgcttcatcacttcaccacaccat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38120706 |
ttttcttaataatagttgcattgcatagtcatgagtatcattagcacaactttggtattaattaacatagttattctgcttcatcacttcaccacaccat |
38120607 |
T |
|
| Q |
301 |
cgttgcatcatcttctacattccctttgcttcatctc |
337 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
38120606 |
cgttgcatcatcttctacattccctttgcttcatctc |
38120570 |
T |
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