View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20701_high_8 (Length: 345)

Name: NF20701_high_8
Description: NF20701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20701_high_8
NF20701_high_8
[»] chr7 (18 HSPs)
chr7 (60-160)||(38599675-38599775)
chr7 (69-160)||(7792350-7792441)
chr7 (75-160)||(33618148-33618233)
chr7 (60-160)||(21146413-21146513)
chr7 (60-120)||(25676097-25676157)
chr7 (60-120)||(37467833-37467893)
chr7 (75-120)||(12847516-12847561)
chr7 (67-120)||(18927345-18927398)
chr7 (60-120)||(522809-522869)
chr7 (65-120)||(4580655-4580710)
chr7 (66-119)||(314108-314161)
chr7 (95-144)||(39296237-39296286)
chr7 (95-144)||(39297938-39297987)
chr7 (60-120)||(32813296-32813356)
chr7 (66-120)||(45300867-45300921)
chr7 (82-119)||(2791557-2791594)
chr7 (74-119)||(7495205-7495250)
chr7 (75-119)||(32542435-32542479)
[»] chr2 (21 HSPs)
chr2 (60-160)||(5617291-5617391)
chr2 (60-160)||(38285996-38286096)
chr2 (60-160)||(43871391-43871491)
chr2 (75-160)||(9171571-9171656)
chr2 (60-160)||(42554046-42554146)
chr2 (67-119)||(32092694-32092746)
chr2 (60-120)||(11709716-11709776)
chr2 (60-120)||(12371434-12371494)
chr2 (60-120)||(35467143-35467203)
chr2 (60-120)||(35852326-35852386)
chr2 (60-120)||(37425843-37425903)
chr2 (60-120)||(42453645-42453705)
chr2 (62-119)||(31920736-31920793)
chr2 (75-120)||(45325973-45326018)
chr2 (62-120)||(9305175-9305233)
chr2 (75-120)||(41760032-41760077)
chr2 (64-119)||(27247443-27247498)
chr2 (59-119)||(34041221-34041280)
chr2 (60-114)||(88935-88988)
chr2 (75-113)||(5962316-5962354)
chr2 (101-143)||(37486609-37486651)
[»] chr3 (21 HSPs)
chr3 (60-158)||(21452958-21453056)
chr3 (60-158)||(21458132-21458230)
chr3 (60-160)||(51390458-51390558)
chr3 (75-160)||(18365547-18365632)
chr3 (67-120)||(45691587-45691640)
chr3 (60-120)||(14502-14562)
chr3 (60-120)||(19286565-19286625)
chr3 (60-120)||(21912547-21912607)
chr3 (60-120)||(33050126-33050186)
chr3 (60-120)||(40997529-40997589)
chr3 (60-120)||(41949936-41949996)
chr3 (60-120)||(50901362-50901422)
chr3 (60-120)||(5410147-5410207)
chr3 (75-119)||(54768370-54768414)
chr3 (69-116)||(5962170-5962217)
chr3 (60-119)||(27263343-27263402)
chr3 (228-262)||(18365464-18365498)
chr3 (75-117)||(34848116-34848158)
chr3 (75-120)||(33987557-33987602)
chr3 (115-160)||(35367264-35367309)
chr3 (75-107)||(104726-104758)
[»] chr8 (22 HSPs)
chr8 (80-160)||(30021513-30021593)
chr8 (61-160)||(41160288-41160387)
chr8 (67-160)||(43749252-43749345)
chr8 (64-160)||(13169741-13169837)
chr8 (75-161)||(14123884-14123970)
chr8 (78-160)||(38805664-38805745)
chr8 (60-120)||(2377973-2378034)
chr8 (17-62)||(30020375-30020420)
chr8 (60-120)||(4594829-4594889)
chr8 (60-120)||(23615942-23616002)
chr8 (60-120)||(30591610-30591670)
chr8 (60-120)||(30886830-30886890)
chr8 (60-120)||(34852940-34853000)
chr8 (62-120)||(14118035-14118094)
chr8 (61-120)||(34740363-34740422)
chr8 (60-120)||(31961495-31961555)
chr8 (75-120)||(26759000-26759045)
chr8 (62-119)||(28153956-28154013)
chr8 (228-262)||(30021398-30021432)
chr8 (165-214)||(30021450-30021499)
chr8 (74-119)||(45263767-45263812)
chr8 (63-119)||(30273172-30273228)
[»] chr5 (18 HSPs)
chr5 (61-160)||(17391150-17391251)
chr5 (67-120)||(7015404-7015457)
chr5 (60-159)||(25595438-25595542)
chr5 (60-120)||(670839-670899)
chr5 (60-120)||(2849125-2849185)
chr5 (60-120)||(15295931-15295991)
chr5 (60-120)||(30985393-30985453)
chr5 (60-120)||(35858323-35858383)
chr5 (75-144)||(17815825-17815894)
chr5 (67-120)||(41308430-41308483)
chr5 (60-120)||(10646866-10646926)
chr5 (60-120)||(21119236-21119296)
chr5 (61-119)||(19265207-19265265)
chr5 (60-120)||(25104582-25104642)
chr5 (60-120)||(25163675-25163735)
chr5 (60-144)||(17820434-17820518)
chr5 (75-115)||(7711318-7711358)
chr5 (75-119)||(17815497-17815541)
[»] chr4 (12 HSPs)
chr4 (60-160)||(3075469-3075569)
chr4 (70-155)||(1757362-1757447)
chr4 (61-160)||(19914815-19914913)
chr4 (75-120)||(16325464-16325509)
chr4 (67-120)||(20254373-20254426)
chr4 (60-120)||(26497345-26497405)
chr4 (60-120)||(36665864-36665924)
chr4 (60-120)||(49316215-49316275)
chr4 (60-120)||(49965274-49965334)
chr4 (60-120)||(3146346-3146406)
chr4 (60-120)||(34150963-34151023)
chr4 (60-119)||(30548155-30548214)
[»] chr1 (11 HSPs)
chr1 (68-158)||(52869037-52869126)
chr1 (67-120)||(41444723-41444776)
chr1 (66-120)||(25700213-25700267)
chr1 (62-120)||(50581064-50581122)
chr1 (60-120)||(14544521-14544581)
chr1 (69-119)||(17306480-17306530)
chr1 (67-120)||(33112511-33112564)
chr1 (67-120)||(43055818-43055871)
chr1 (70-139)||(48175383-48175452)
chr1 (61-120)||(33113262-33113322)
chr1 (76-120)||(22582401-22582444)
[»] chr6 (12 HSPs)
chr6 (60-120)||(5059457-5059517)
chr6 (60-120)||(10839832-10839892)
chr6 (60-120)||(25085941-25086001)
chr6 (60-120)||(29918681-29918741)
chr6 (60-120)||(30599243-30599303)
chr6 (60-120)||(2525392-2525452)
chr6 (61-120)||(34782714-34782773)
chr6 (61-120)||(5272086-5272146)
chr6 (66-120)||(5173082-5173136)
chr6 (70-119)||(17508507-17508556)
chr6 (61-114)||(25510160-25510211)
chr6 (61-114)||(26046539-26046590)
[»] scaffold0365 (1 HSPs)
scaffold0365 (60-120)||(341-401)
[»] scaffold0024 (1 HSPs)
scaffold0024 (64-120)||(92907-92963)


Alignment Details
Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 60 - 160
Target Start/End: Original strand, 38599675 - 38599775
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataaggataataaagtaatgaaacaatagcaatgtaatcgata 159  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| | ||||||||||||    
T  38599675 aaggggaggggaggtattttaaaattattttactgttttacccttaaacttaattaaataagaataataaagtaacgaaacaataacgatgtaatcgata 38599774  T
Q  160 a 160  Q
    |    
T  38599775 a 38599775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 69 - 160
Target Start/End: Complemental strand, 7792441 - 7792350
Alignment:
Q  69 ggaggaattttaaaattattttactgttttacccttaaacttaattaaataaggataataaagtaatgaaacaatagcaatgtaatcgataa 160  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||| ||||    
T  7792441 ggagggattttaagattattttactgttttacccttaaacttaattaaataaggataataaagtaacgaaacaataacgatgtaatcaataa 7792350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 75 - 160
Target Start/End: Original strand, 33618148 - 33618233
Alignment:
Q  75 attttaaaattattttactgttttacccttaaacttaattaaataaggataataaagtaatgaaacaatagcaatgtaatcgataa 160  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||    
T  33618148 attttaatattattttactgttttactcttaaacttaattaaataaggataataaagtaaagaaacaataacgatgtaatcgataa 33618233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 60 - 160
Target Start/End: Complemental strand, 21146513 - 21146413
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataaggataataaagtaatgaaacaatagcaatgtaatcgata 159  Q
    |||||||||||| ||||||||||||||||||||| ||||| |||||||||||||| |||||| ||||||||||||  |||||||| | ||||||||||||    
T  21146513 aaggggaggggatgaattttaaaattattttactattttatccttaaacttaattgaataagaataataaagtaacaaaacaataacgatgtaatcgata 21146414  T
Q  160 a 160  Q
    |    
T  21146413 a 21146413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 25676097 - 25676157
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    ||||| |||||||  |||||||||||||||||| |||||||||||||||||||||||||||    
T  25676097 aagggtaggggagatattttaaaattattttaccgttttacccttaaacttaattaaataa 25676157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 37467833 - 37467893
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||||||| ||||||| | |||||||| |||||||||||||||||||||||||||    
T  37467833 aaggggaggggagggattttaacagtattttaccgttttacccttaaacttaattaaataa 37467893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 12847516 - 12847561
Alignment:
Q  75 attttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  12847516 attttaaaattattttaccgttttacccttaaacttaattaaataa 12847561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 18927345 - 18927398
Alignment:
Q  67 ggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    ||||||| ||||||||||||||||||||||| || |||||||||||||||||||    
T  18927345 ggggagggattttaaaattattttactgtttcacacttaaacttaattaaataa 18927398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 522869 - 522809
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||||||| ||||||| | |||||||| ||||||||| |||||||||||||||||    
T  522869 aaggggaggggagggattttaacagtattttaccgttttacccctaaacttaattaaataa 522809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 4580655 - 4580710
Alignment:
Q  65 gaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    ||||||||| ||||||| | |||||||| |||||||||||||||||||||||||||    
T  4580655 gaggggagggattttaacagtattttaccgttttacccttaaacttaattaaataa 4580710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 314108 - 314161
Alignment:
Q  66 aggggaggaattttaaaattattttactgttttacccttaaacttaattaaata 119  Q
    |||||||  |||||||||||| |||| |||||||||||||||||||||||||||    
T  314108 aggggagagattttaaaattaatttattgttttacccttaaacttaattaaata 314161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 39296286 - 39296237
Alignment:
Q  95 ttttacccttaaacttaattaaataaggataataaagtaatgaaacaata 144  Q
    ||||||| ||||||||||||| |||||||||||||||||||||| |||||    
T  39296286 ttttacctttaaacttaattagataaggataataaagtaatgaagcaata 39296237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 39297987 - 39297938
Alignment:
Q  95 ttttacccttaaacttaattaaataaggataataaagtaatgaaacaata 144  Q
    |||||||  |||||||||||| ||||||||||||||||||||||||||||    
T  39297987 ttttacctctaaacttaattagataaggataataaagtaatgaaacaata 39297938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 32813356 - 32813296
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||||||| ||||||| | ||||||||  |||||| |||||||||||||||||||    
T  32813356 aaggggaggggagggattttaacagtattttaccattttacacttaaacttaattaaataa 32813296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 120
Target Start/End: Complemental strand, 45300921 - 45300867
Alignment:
Q  66 aggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||| |||||||   |||||||| |||||||||||||||||||||||||||    
T  45300921 aggggagggattttaactgtattttaccgttttacccttaaacttaattaaataa 45300867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 2791557 - 2791594
Alignment:
Q  82 aattattttactgttttacccttaaacttaattaaata 119  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  2791557 aattaatttacttttttacccttaaacttaattaaata 2791594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 7495205 - 7495250
Alignment:
Q  74 aattttaaaattattttactgttttacccttaaacttaattaaata 119  Q
    ||||||||||||| |||||  ||||| |||||||||||||||||||    
T  7495205 aattttaaaattaatttacaattttaaccttaaacttaattaaata 7495250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 32542479 - 32542435
Alignment:
Q  75 attttaaaattattttactgttttacccttaaacttaattaaata 119  Q
    |||||||||| | |||| | |||||||||||||||||||||||||    
T  32542479 attttaaaatcaatttaatattttacccttaaacttaattaaata 32542435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 60 - 160
Target Start/End: Complemental strand, 5617391 - 5617291
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataaggataataaagtaatgaaacaatagcaatgtaatcgata 159  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||| | ||||||||||||    
T  5617391 aaggggaggggaggtattttaaaattattttactgttttacccttaaatttaattaaataaggataataaagtaataaaacgataacgatgtaatcgata 5617292  T
Q  160 a 160  Q
    |    
T  5617291 a 5617291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 60 - 160
Target Start/End: Complemental strand, 38286096 - 38285996
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataaggataataaagtaatgaaacaatagcaatgtaatcgata 159  Q
    |||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||    
T  38286096 aaggggaggggaggaattttgaaattattttactattttactcttaaacttaattaaataaggataataaagtaacgaaacattaacaatgtaatcgata 38285997  T
Q  160 a 160  Q
    |    
T  38285996 a 38285996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 60 - 160
Target Start/End: Complemental strand, 43871491 - 43871391
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataaggataataaagtaatgaaacaatagcaatgtaatcgata 159  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| | |||||||| |||    
T  43871491 aaggggaggggagggattttataattattttactgttttacccttaaacttaattaaataaggataataaagcaacgaaacaataacgatgtaatctata 43871392  T
Q  160 a 160  Q
    |    
T  43871391 a 43871391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 75 - 160
Target Start/End: Complemental strand, 9171656 - 9171571
Alignment:
Q  75 attttaaaattattttactgttttacccttaaacttaattaaataaggataataaagtaatgaaacaatagcaatgtaatcgataa 160  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||| |||||    
T  9171656 attttaaaattattttactgttttacccttaaacttaattaaataaggataataaagtaacgaaacaataacgatgtaatggataa 9171571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 60 - 160
Target Start/End: Complemental strand, 42554146 - 42554046
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataaggataataaagtaatgaaacaatagcaatgtaatcgata 159  Q
    |||||||||||| |||||||||||| |||||||| ||||||||||||| |||||||||||||||||||| ||||| || |||||| | ||||||||||||    
T  42554146 aaggggaggggacgaattttaaaatcattttactattttacccttaaagttaattaaataaggataatagagtaacgagacaataacgatgtaatcgata 42554047  T
Q  160 a 160  Q
    |    
T  42554046 a 42554046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 32092694 - 32092746
Alignment:
Q  67 ggggaggaattttaaaattattttactgttttacccttaaacttaattaaata 119  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  32092694 ggggagggattttaaaattattttactgttttacccttaaacttaattaaata 32092746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 11709776 - 11709716
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||||||| ||||||| | |||||||| |||||||||||||||||||||||||||    
T  11709776 aaggggaggggagggattttaacagtattttaccgttttacccttaaacttaattaaataa 11709716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 12371434 - 12371494
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||||||| ||||||| | |||||||| |||||||||||||||||||||||||||    
T  12371434 aaggggaggggagggattttaacagtattttaccgttttacccttaaacttaattaaataa 12371494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 35467203 - 35467143
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||||||| ||||||| | ||||||||| ||||||||||||||||||||||||||    
T  35467203 aaggggaggggagggattttaacagtattttactattttacccttaaacttaattaaataa 35467143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 35852326 - 35852386
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||||||| ||||||| | |||||||| |||||||||||||||||||||||||||    
T  35852326 aaggggaggggagggattttaacagtattttaccgttttacccttaaacttaattaaataa 35852386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 37425843 - 37425903
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||||||| ||||||| | |||||||| |||||||||||||||||||||||||||    
T  37425843 aaggggaggggagggattttaacagtattttaccgttttacccttaaacttaattaaataa 37425903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 42453705 - 42453645
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||||||| ||||||| | |||||||| |||||||||||||||||||||||||||    
T  42453705 aaggggaggggagggattttaacagtattttaccgttttacccttaaacttaattaaataa 42453645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 62 - 119
Target Start/End: Complemental strand, 31920793 - 31920736
Alignment:
Q  62 ggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaata 119  Q
    |||||||||||| ||||||||| |||||||| |||||||||||||| |||||||||||    
T  31920793 ggggaggggagggattttaaaactattttacagttttacccttaaatttaattaaata 31920736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 45325973 - 45326018
Alignment:
Q  75 attttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  45325973 attttaaaattattttaccgttttacccttaaacttaattaaataa 45326018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 9305233 - 9305175
Alignment:
Q  62 ggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||||| ||||||| | ||||||||  ||||||||||||||||||||||||||    
T  9305233 ggggaggggagggattttaacagtattttaccattttacccttaaacttaattaaataa 9305175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 41760077 - 41760032
Alignment:
Q  75 attttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||    
T  41760077 attttaaaattattttaccgttttatccttaaacttaattaaataa 41760032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 27247498 - 27247443
Alignment:
Q  64 ggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaata 119  Q
    |||||||| ||||||| |||||| |||||||||||| | |||||||||||||||||    
T  27247498 ggaggggatgaatttttaaattaatttactgttttatcattaaacttaattaaata 27247443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 34041221 - 34041280
Alignment:
Q  59 aaaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaata 119  Q
    ||||||||| ||||| ||| |||||||| ||||| |||| |||||||||||||||||||||    
T  34041221 aaaggggagtggagggattctaaaattaatttacggttt-acccttaaacttaattaaata 34041280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 88988 - 88935
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaatt 114  Q
    ||||||| |||||  |||||||||||| |||||| ||||||||||||||||||||    
T  88988 aaggggaagggagagattttaaaattaatttact-ttttacccttaaacttaatt 88935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 113
Target Start/End: Complemental strand, 5962354 - 5962316
Alignment:
Q  75 attttaaaattattttactgttttacccttaaacttaat 113  Q
    |||||||||||| |||||| |||||||||||||||||||    
T  5962354 attttaaaattaatttactattttacccttaaacttaat 5962316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 143
Target Start/End: Complemental strand, 37486651 - 37486609
Alignment:
Q  101 ccttaaacttaattaaataaggataataaagtaatgaaacaat 143  Q
    ||||||||||||||||||| ||||||||||||||  |||||||    
T  37486651 ccttaaacttaattaaatatggataataaagtaacaaaacaat 37486609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 60 - 158
Target Start/End: Original strand, 21452958 - 21453056
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataaggataataaagtaatgaaacaatagcaatgtaatcgat 158  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||| | |||||||||||    
T  21452958 aaggggaggggagggattttaaaattattttaatgttttacccttaaacttaattaaataaggataataaagtaacgaaataataacgatgtaatcgat 21453056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 60 - 158
Target Start/End: Original strand, 21458132 - 21458230
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataaggataataaagtaatgaaacaatagcaatgtaatcgat 158  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||| | |||||||||||    
T  21458132 aaggggaggggagggattttaaaattattttaatgttttacccttaaacttaattaaataaggataataaagtaacgaaataataacgatgtaatcgat 21458230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 60 - 160
Target Start/End: Original strand, 51390458 - 51390558
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataaggataataaagtaatgaaacaatagcaatgtaatcgata 159  Q
    |||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  | ||||||||||||    
T  51390458 aaggagaggggagaaattttaaaactattttactgttttacccttaaacttaattaaataaggataataaagtaacgaaacaatgacgatgtaatcgata 51390557  T
Q  160 a 160  Q
    |    
T  51390558 a 51390558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 75 - 160
Target Start/End: Complemental strand, 18365632 - 18365547
Alignment:
Q  75 attttaaaattattttactgttttacccttaaacttaattaaataaggataataaagtaatgaaacaatagcaatgtaatcgataa 160  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||| |||||||||| ||||    
T  18365632 attttaaaattattttactgttttacccttaaacttaattgaataaggataataaagtaacgaaaaaataacaatgtaatccataa 18365547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 45691587 - 45691640
Alignment:
Q  67 ggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  45691587 ggggagggattttaaaattattttaccgttttacccttaaacttaattaaataa 45691640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 14502 - 14562
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||||||| ||||||| | |||||||| |||||||||||||||||||||||||||    
T  14502 aaggggaggggagggattttaacagtattttaccgttttacccttaaacttaattaaataa 14562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 19286625 - 19286565
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||||||| ||||||| | |||||||| |||||||||||||||||||||||||||    
T  19286625 aaggggaggggagggattttaacagtattttaccgttttacccttaaacttaattaaataa 19286565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 21912547 - 21912607
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||||||| ||||||| | |||||||| |||||||||||||||||||||||||||    
T  21912547 aaggggaggggagggattttaacagtattttaccgttttacccttaaacttaattaaataa 21912607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 33050186 - 33050126
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||||||| ||||||| | |||||||| |||||||||||||||||||||||||||    
T  33050186 aaggggaggggagggattttaacagtattttaccgttttacccttaaacttaattaaataa 33050126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 40997589 - 40997529
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||||||| ||||||| | |||||||| |||||||||||||||||||||||||||    
T  40997589 aaggggaggggagggattttaacagtattttaccgttttacccttaaacttaattaaataa 40997529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 41949936 - 41949996
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||||||| ||||||| | |||||||| |||||||||||||||||||||||||||    
T  41949936 aaggggaggggagggattttaacagtattttaccgttttacccttaaacttaattaaataa 41949996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 50901362 - 50901422
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||||||| ||||||| | |||||||| |||||||||||||||||||||||||||    
T  50901362 aaggggaggggagggattttaacagtattttaccgttttacccttaaacttaattaaataa 50901422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 5410207 - 5410147
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||||||  ||||| || ||||||||| |||||||||||||||||||||||||||    
T  5410207 aaggggaggggagagatttttaatttattttaccgttttacccttaaacttaattaaataa 5410147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 54768370 - 54768414
Alignment:
Q  75 attttaaaattattttactgttttacccttaaacttaattaaata 119  Q
    |||||||||||| |||| |||||||||||||||||||||||||||    
T  54768370 attttaaaattaatttattgttttacccttaaacttaattaaata 54768414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 116
Target Start/End: Original strand, 5962170 - 5962217
Alignment:
Q  69 ggaggaattttaaaattattttactgttttacccttaaacttaattaa 116  Q
    ||||| |||||||||||| |||||||||||||||| ||||||||||||    
T  5962170 ggagggattttaaaattaatttactgttttaccctcaaacttaattaa 5962217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 27263343 - 27263402
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaata 119  Q
    ||||||| |||||| |||||||||||| |||||| | ||||||||||||||| |||||||    
T  27263343 aaggggaagggagggattttaaaattaatttactatcttacccttaaacttacttaaata 27263402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 262
Target Start/End: Complemental strand, 18365498 - 18365464
Alignment:
Q  228 aagtagtaataaaagttgttacaatgaaaagttgt 262  Q
    |||||||||||||||||||||||| ||||||||||    
T  18365498 aagtagtaataaaagttgttacaaagaaaagttgt 18365464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 34848116 - 34848158
Alignment:
Q  75 attttaaaattattttactgttttacccttaaacttaattaaa 117  Q
    |||||||||||| |||| |||||||||||| ||||||||||||    
T  34848116 attttaaaattagtttattgttttaccctttaacttaattaaa 34848158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 33987557 - 33987602
Alignment:
Q  75 attttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||||| |||||||||||||| ||||| ||| ||||||||    
T  33987557 attttaaaattaatttactgttttacctttaaatttagttaaataa 33987602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 160
Target Start/End: Complemental strand, 35367309 - 35367264
Alignment:
Q  115 aaataaggataataaagtaatgaaacaatagcaatgtaatcgataa 160  Q
    ||||||| | |||||||||||||||||||| | |||||||||||||    
T  35367309 aaataagaagaataaagtaatgaaacaataacgatgtaatcgataa 35367264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 107
Target Start/End: Original strand, 104726 - 104758
Alignment:
Q  75 attttaaaattattttactgttttacccttaaa 107  Q
    ||||||||||||||||||| |||||||||||||    
T  104726 attttaaaattattttacttttttacccttaaa 104758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 80 - 160
Target Start/End: Complemental strand, 30021593 - 30021513
Alignment:
Q  80 aaaattattttactgttttacccttaaacttaattaaataaggataataaagtaatgaaacaatagcaatgtaatcgataa 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  30021593 aaaattattttactgttttacccttaaacttaattaaataaggataataaagtaacgaaacaataacaatgtaatcgataa 30021513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 61 - 160
Target Start/End: Complemental strand, 41160387 - 41160288
Alignment:
Q  61 aggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataaggataataaagtaatgaaacaatagcaatgtaatcgataa 160  Q
    |||||||||||   |||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  41160387 aggggaggggaaatattttaaaatgattttactgatttacctttaaacttaattaaataaggataataaagtaatgaaacaataacgatgtaatcgataa 41160288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 67 - 160
Target Start/End: Complemental strand, 43749345 - 43749252
Alignment:
Q  67 ggggaggaattttaaaattattttactgttttacccttaaacttaattaaataaggataataaagtaatgaaacaatagcaatgtaatcgataa 160  Q
    ||||| ||||||| ||||||||||| | |||||||||||||||||||||||||| ||||||||||||| ||||||||| | |||||| ||||||    
T  43749345 ggggaagaatttttaaattattttatttttttacccttaaacttaattaaataaagataataaagtaacgaaacaataacgatgtaaccgataa 43749252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 64 - 160
Target Start/End: Complemental strand, 13169837 - 13169741
Alignment:
Q  64 ggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataaggataataaagtaatgaaacaatagcaatgtaatcgataa 160  Q
    |||||||||| | |||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||  ||||||||   |||||||||||||    
T  13169837 ggaggggagggactttaaaattaatttactattttaccattaaacttaattaaataaggataataaagtaacaaaacaataatgatgtaatcgataa 13169741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 14123970 - 14123884
Alignment:
Q  75 attttaaaattattttactgttttacccttaaacttaattaaataaggataataaagtaatgaaacaatagcaatgtaatcgataag 161  Q
    |||||||||||||||||| |||||| |||||  ||||||||||||||||||| ||||||| ||||||||  | ||||||||||||||    
T  14123970 attttaaaattattttacagttttatccttaggcttaattaaataaggataacaaagtaacgaaacaatcacgatgtaatcgataag 14123884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 78 - 160
Target Start/End: Original strand, 38805664 - 38805745
Alignment:
Q  78 ttaaaattattttactgttttacccttaaacttaattaaataaggataataaagtaatgaaacaatagcaatgtaatcgataa 160  Q
    |||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||||| | | |||||||||||||    
T  38805664 ttaaaattattt-actgttttacccttgaacttaattaaataaggttaataaagtaacgaaacaacaacgatgtaatcgataa 38805745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 2377973 - 2378034
Alignment:
Q  60 aaggggag-gggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  2377973 aaggggagagggagggattttaaaattattttaccgttttacccttaaacttaattaaataa 2378034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 30020375 - 30020420
Alignment:
Q  17 atgttcagcgccattcactattgctatgttatcatcaggagcaaag 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  30020375 atgttcagcgccattcactattgctatgttatcatcaggagcaaag 30020420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 4594829 - 4594889
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||||||| ||||||| | |||||||| |||||||||||||||||||||||||||    
T  4594829 aaggggaggggagggattttaacagtattttaccgttttacccttaaacttaattaaataa 4594889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 23616002 - 23615942
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||||||| ||||||| | |||||||| |||||||||||||||||||||||||||    
T  23616002 aaggggaggggagggattttaacagtattttaccgttttacccttaaacttaattaaataa 23615942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 30591670 - 30591610
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||||||| ||||||| | |||||||| |||||||||||||||||||||||||||    
T  30591670 aaggggaggggagggattttaacagtattttaccgttttacccttaaacttaattaaataa 30591610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 30886830 - 30886890
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||||||| ||||||| | |||||||| |||||||||||||||||||||||||||    
T  30886830 aaggggaggggagggattttaacagtattttaccgttttacccttaaacttaattaaataa 30886890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 34853000 - 34852940
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||||||| ||||||| | |||||||| |||||||||||||||||||||||||||    
T  34853000 aaggggaggggagggattttaacagtattttaccgttttacccttaaacttaattaaataa 34852940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 14118035 - 14118094
Alignment:
Q  62 ggggaggg-gaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  14118035 ggggagggagagggattttaaaattattttaccgttttacccttaaacttaattaaataa 14118094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 61 - 120
Target Start/End: Original strand, 34740363 - 34740422
Alignment:
Q  61 aggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    ||||||||||||| |||||| |||||||||||  ||||||||||||||||||||||||||    
T  34740363 aggggaggggagggattttataattattttaccattttacccttaaacttaattaaataa 34740422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 31961555 - 31961495
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||||||  ||||||| | |||||||| |||||||||||||||||||||||||||    
T  31961555 aaggggaggggagagattttaacagtattttaccgttttacccttaaacttaattaaataa 31961495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 26759045 - 26759000
Alignment:
Q  75 attttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||    
T  26759045 attttaaaattattttaccgtttaacccttaaacttaattaaataa 26759000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 119
Target Start/End: Original strand, 28153956 - 28154013
Alignment:
Q  62 ggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaata 119  Q
    |||||||||||| ||||||||| |||||||| ||| || | |||||||||||||||||    
T  28153956 ggggaggggagggattttaaaactattttacagttctatctttaaacttaattaaata 28154013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 262
Target Start/End: Complemental strand, 30021432 - 30021398
Alignment:
Q  228 aagtagtaataaaagttgttacaatgaaaagttgt 262  Q
    ||||| |||||||||||||||||||||||||||||    
T  30021432 aagtaataataaaagttgttacaatgaaaagttgt 30021398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 30021499 - 30021450
Alignment:
Q  165 acaatgaaacattgaattaataattggggtgttgcaagcagtaataaaag 214  Q
    |||||| |||||||||||||||||  |||||||||||| | |||||||||    
T  30021499 acaatggaacattgaattaataataagggtgttgcaagtaataataaaag 30021450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 45263767 - 45263812
Alignment:
Q  74 aattttaaaattattttactgttttacccttaaacttaattaaata 119  Q
    ||||||||||||| ||||||||||||  ||||||||||||| ||||    
T  45263767 aattttaaaattaatttactgttttattcttaaacttaattgaata 45263812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 30273172 - 30273228
Alignment:
Q  63 gggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaata 119  Q
    ||||||||||  |||| ||||||| |||||| ||||| | |||||||||||||||||    
T  30273172 gggaggggagagatttcaaaattaatttactattttatctttaaacttaattaaata 30273228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 61 - 160
Target Start/End: Original strand, 17391150 - 17391251
Alignment:
Q  61 aggggagggga-ggaattttaaaattattttactgttttacccttaaacttaattaaataaggataataaagtaatgaaacaatagc-aatgtaatcgat 158  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| | ||||||||||||    
T  17391150 aggggaggggaagggattttaaaattattttactgttttacccttaaacttaaataattaaggataataaagtaatgaaacaataacgaatgtaatcgat 17391249  T
Q  159 aa 160  Q
    ||    
T  17391250 aa 17391251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 120
Target Start/End: Complemental strand, 7015457 - 7015404
Alignment:
Q  67 ggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7015457 ggggaggaattttaaaattattttactgtttaacccttaaacttaattaaataa 7015404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 60 - 159
Target Start/End: Complemental strand, 25595542 - 25595438
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaactt-----aattaaataaggataataaagtaatgaaacaatagcaatgtaat 154  Q
    |||||||| |||| ||||||||||||| |||| |||||||| |||||||||     |||||||||||||||||| ||||| ||||||||| | |||||||    
T  25595542 aaggggagaggagaaattttaaaattaatttattgttttacgcttaaacttggttaaattaaataaggataatagagtaaagaaacaataacgatgtaat 25595443  T
Q  155 cgata 159  Q
    |||||    
T  25595442 cgata 25595438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 670899 - 670839
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||||||| ||||||| | |||||||| |||||||||||||||||||||||||||    
T  670899 aaggggaggggagggattttaacagtattttaccgttttacccttaaacttaattaaataa 670839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 2849125 - 2849185
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||||||| ||||||| | |||||||| |||||||||||||||||||||||||||    
T  2849125 aaggggaggggagggattttaacagtattttaccgttttacccttaaacttaattaaataa 2849185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 15295991 - 15295931
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||||||| ||||||| | |||||||| |||||||||||||||||||||||||||    
T  15295991 aaggggaggggagggattttaacagtattttaccgttttacccttaaacttaattaaataa 15295931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 30985453 - 30985393
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||||||| ||||||| | |||||||| |||||||||||||||||||||||||||    
T  30985453 aaggggaggggagggattttaacagtattttaccgttttacccttaaacttaattaaataa 30985393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 35858323 - 35858383
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||||||| ||||||| | |||||||| |||||||||||||||||||||||||||    
T  35858323 aaggggaggggagggattttaacagtattttaccgttttacccttaaacttaattaaataa 35858383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 75 - 144
Target Start/End: Original strand, 17815825 - 17815894
Alignment:
Q  75 attttaaaattattttactgttttacccttaaacttaattaaataaggataataaagtaatgaaacaata 144  Q
    |||||||||||| |||| |||||||||||||||||||||| | |||| |||||||| ||| |||||||||    
T  17815825 attttaaaattaatttattgttttacccttaaacttaattgattaagtataataaaataacgaaacaata 17815894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 67 - 120
Target Start/End: Complemental strand, 41308483 - 41308430
Alignment:
Q  67 ggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    ||||||| ||||||||||||||||||  ||||||||||||||||||||||||||    
T  41308483 ggggaggtattttaaaattattttaccattttacccttaaacttaattaaataa 41308430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 10646926 - 10646866
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||||||| ||||||| | |||||||| ||||||||||||||||| |||||||||    
T  10646926 aaggggaggggagggattttaacagtattttaccgttttacccttaaacttcattaaataa 10646866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 21119236 - 21119296
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||||||| ||||||| | ||||||||  ||||||||||||||||||||||||||    
T  21119236 aaggggaggggagggattttaacagtattttaccattttacccttaaacttaattaaataa 21119296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 19265207 - 19265265
Alignment:
Q  61 aggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaata 119  Q
    |||||| ||||||||||||||||||| |||||||||| | ||| |||||||||||||||    
T  19265207 aggggaagggaggaattttaaaattaatttactgtttaaacctcaaacttaattaaata 19265265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 25104582 - 25104642
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    ||||| |||||||| ||||| |||||| ||||  |||||||||||||||||||||||||||    
T  25104582 aagggaaggggagggatttttaaattactttaacgttttacccttaaacttaattaaataa 25104642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 25163675 - 25163735
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    ||||| |||||||| ||||| |||||| ||||  |||||||||||||||||||||||||||    
T  25163675 aagggaaggggagggatttttaaattactttaacgttttacccttaaacttaattaaataa 25163735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 144
Target Start/End: Original strand, 17820434 - 17820518
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataaggataataaagtaatgaaacaata 144  Q
    |||||||||| | | |||||||||||| || | |||||||| |||||||||| |||| |||| ||| ||||| || |||||||||    
T  17820434 aaggggagggaatggattttaaaattaattaattgttttactcttaaacttacttaattaagaatagtaaagaaacgaaacaata 17820518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 115
Target Start/End: Original strand, 7711318 - 7711358
Alignment:
Q  75 attttaaaattattttactgttttacccttaaacttaatta 115  Q
    |||||||||||| ||||| |||||||||||||||| |||||    
T  7711318 attttaaaattaatttaccgttttacccttaaactaaatta 7711358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 17815541 - 17815497
Alignment:
Q  75 attttaaaattattttactgttttacccttaaacttaattaaata 119  Q
    |||||||||| | |||| ||||||| |||||||||||||||||||    
T  17815541 attttaaaataaatttattgttttaaccttaaacttaattaaata 17815497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 60 - 160
Target Start/End: Complemental strand, 3075569 - 3075469
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataaggataataaagtaatgaaacaatagcaatgtaatcgata 159  Q
    |||||||||||||  |||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||| |||| ||||   ||||||||||||    
T  3075569 aaggggaggggagagattttaaaattagtttactattttacccttaaacttaatcaaataaggataataaagtaacgaaataataatgatgtaatcgata 3075470  T
Q  160 a 160  Q
    |    
T  3075469 a 3075469  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 70 - 155
Target Start/End: Complemental strand, 1757447 - 1757362
Alignment:
Q  70 gaggaattttaaaattattttactgttttacccttaaacttaattaaataaggataataaagtaatgaaacaatagcaatgtaatc 155  Q
    |||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||| | ||||||||    
T  1757447 gagggattttaaaattaatttactgttttacccttaaacttaataaaataaggataataaactaacgaaacaataacgatgtaatc 1757362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 61 - 160
Target Start/End: Complemental strand, 19914913 - 19914815
Alignment:
Q  61 aggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataaggataataaagtaatgaaacaatagcaatgtaatcgataa 160  Q
    ||||||||||||  |||||||||| |||||||| |||||||||||||||||| |||||||| |||||||| ||| ||||||||| | ||||| |||||||    
T  19914913 aggggaggggagagattttaaaatgattttactcttttacccttaaacttaa-taaataagaataataaattaacgaaacaataacgatgtagtcgataa 19914815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 16325464 - 16325509
Alignment:
Q  75 attttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  16325464 attttaaaattattttactgttttacccttaaacttaattaaataa 16325509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 20254373 - 20254426
Alignment:
Q  67 ggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  20254373 ggggagggattttaaaattattttactgttttatccttaaacttaattaaataa 20254426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 26497405 - 26497345
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||||||| ||||||| | |||||||| |||||||||||||||||||||||||||    
T  26497405 aaggggaggggagggattttaacagtattttaccgttttacccttaaacttaattaaataa 26497345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 36665864 - 36665924
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||||||| ||||||| | |||||||| |||||||||||||||||||||||||||    
T  36665864 aaggggaggggagggattttaacaatattttaccgttttacccttaaacttaattaaataa 36665924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 49316215 - 49316275
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||||||| ||||||| | |||||||| |||||||||||||||||||||||||||    
T  49316215 aaggggaggggagggattttaacagtattttaccgttttacccttaaacttaattaaataa 49316275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 49965274 - 49965334
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||||||| ||||||| | |||||||| |||||||||||||||||||||||||||    
T  49965274 aaggggaggggagggattttaacagtattttaccgttttacccttaaacttaattaaataa 49965334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 3146346 - 3146406
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||||||| ||||||| | |||||||| |||||| ||||||||||||||||||||    
T  3146346 aaggggaggggagggattttaacagtattttaccgttttatccttaaacttaattaaataa 3146406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 34151023 - 34150963
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    ||||||||| |||| ||||||| | |||||||| |||||||||||||||||||||||||||    
T  34151023 aaggggaggtgagggattttaacaatattttaccgttttacccttaaacttaattaaataa 34150963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 30548155 - 30548214
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaata 119  Q
    ||||| ||||||| || |||||||||| ||||||||||||| |||||||||||| |||||    
T  30548155 aagggaaggggagaaagtttaaaattaatttactgttttactcttaaacttaatcaaata 30548214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 68 - 158
Target Start/End: Original strand, 52869037 - 52869126
Alignment:
Q  68 gggaggaattttaaaattattttactgttttacccttaaacttaattaaataaggataataaagtaatgaaacaatagcaatgtaatcgat 158  Q
    |||||| |||| |||||||||||| ||||| |||||||||||||||||||||| ||||||||||||| |||||||||   |||||||||||    
T  52869037 gggagggatttaaaaattattttattgttt-acccttaaacttaattaaataaagataataaagtaacgaaacaataatgatgtaatcgat 52869126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 41444723 - 41444776
Alignment:
Q  67 ggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  41444723 ggggagggattttaaaattattttaccgttttacccttaaacttaattaaataa 41444776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 120
Target Start/End: Complemental strand, 25700267 - 25700213
Alignment:
Q  66 aggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||| |||||||||||||||||| ||||||| |||||||||||||||||||    
T  25700267 aggggagggattttaaaattattttaccgttttactcttaaacttaattaaataa 25700213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 50581122 - 50581064
Alignment:
Q  62 ggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||||| ||||||| | |||||||| |||||||||||||||||||||||||||    
T  50581122 ggggaggggagggattttaacagtattttaccgttttacccttaaacttaattaaataa 50581064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 14544581 - 14544521
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||||||  ||||||| | |||||||| |||||||||||||||||||||||||||    
T  14544581 aaggggaggggagagattttaacagtattttaccgttttacccttaaacttaattaaataa 14544521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 17306480 - 17306530
Alignment:
Q  69 ggaggaattttaaaattattttactgttttacccttaaacttaattaaata 119  Q
    |||||| |||||||||||  |||||||||||||||||||||||||||||||    
T  17306480 ggaggagttttaaaattaaattactgttttacccttaaacttaattaaata 17306530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 33112511 - 33112564
Alignment:
Q  67 ggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    ||||||| ||||||||||||||||||  ||||| ||||||||||||||||||||    
T  33112511 ggggagggattttaaaattattttaccattttatccttaaacttaattaaataa 33112564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 120
Target Start/End: Complemental strand, 43055871 - 43055818
Alignment:
Q  67 ggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    ||||||| ||||||| | |||||||| |||||||||||||||||||||||||||    
T  43055871 ggggagggattttaacagtattttaccgttttacccttaaacttaattaaataa 43055818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 139
Target Start/End: Original strand, 48175383 - 48175452
Alignment:
Q  70 gaggaattttaaaattattttactgttttacccttaaacttaattaaataaggataataaagtaatgaaa 139  Q
    |||| ||||||||||||||||| | ||||| ||||||| ||| || ||||| ||||||||||||| ||||    
T  48175383 gagggattttaaaattattttattattttatccttaaatttatttcaataaagataataaagtaacgaaa 48175452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 120
Target Start/End: Complemental strand, 33113322 - 33113262
Alignment:
Q  61 aggggaggggagga-attttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    ||||||||||| || ||||||||||||||||||  |||||||| |||| ||||||||||||    
T  33113322 aggggaggggaagagattttaaaattattttaccattttacccataaatttaattaaataa 33113262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 22582401 - 22582444
Alignment:
Q  76 ttttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    ||||||||||| |||||||||||||| ||||| ||||||||||||    
T  22582401 ttttaaaattaatttactgttttacctttaaa-ttaattaaataa 22582444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 5059457 - 5059517
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||||||| ||||||| | |||||||| |||||||||||||||||||||||||||    
T  5059457 aaggggaggggagggattttaacagtattttaccgttttacccttaaacttaattaaataa 5059517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 10839892 - 10839832
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||||||| ||||||| | |||||||| |||||||||||||||||||||||||||    
T  10839892 aaggggaggggagggattttaacagtattttaccgttttacccttaaacttaattaaataa 10839832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 25085941 - 25086001
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||||||| ||||||| | |||||||| |||||||||||||||||||||||||||    
T  25085941 aaggggaggggagggattttaacagtattttaccgttttacccttaaacttaattaaataa 25086001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 29918681 - 29918741
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||||||| ||||||| | |||||||| |||||||||||||||||||||||||||    
T  29918681 aaggggaggggagggattttaacagtattttaccgttttacccttaaacttaattaaataa 29918741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 30599303 - 30599243
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||||||| ||||||| | |||||||| |||||||||||||||||||||||||||    
T  30599303 aaggggaggggagggattttaacagtattttaccgttttacccttaaacttaattaaataa 30599243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 2525452 - 2525392
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||| ||||||||| ||||||| | |||||||| |||||||||||||||||||||||||||    
T  2525452 aaggtgaggggagggattttaacagtattttaccgttttacccttaaacttaattaaataa 2525392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 120
Target Start/End: Original strand, 34782714 - 34782773
Alignment:
Q  61 aggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    ||||||||||||| ||||||| | |||||||| |||||| ||||||||||||||||||||    
T  34782714 aggggaggggagggattttaacagtattttaccgttttatccttaaacttaattaaataa 34782773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 61 - 120
Target Start/End: Original strand, 5272086 - 5272146
Alignment:
Q  61 aggggagg-ggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||| ||||| |||||||||||||||||| ||||||||||||| |||||||| ||||    
T  5272086 aggggaggaggagggattttaaaattattttaccgttttacccttaatcttaattacataa 5272146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 120
Target Start/End: Original strand, 5173082 - 5173136
Alignment:
Q  66 aggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||| |||||||||||||||||  ||||||||||||| |||||||| ||||    
T  5173082 aggggagggattttaaaattattttatggttttacccttaaccttaattacataa 5173136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 17508507 - 17508556
Alignment:
Q  70 gaggaattttaaaattattttactgttttacccttaaacttaattaaata 119  Q
    |||| |||||||||||| |||| | |||||||||||||||||||||||||    
T  17508507 gagggattttaaaattaatttattattttacccttaaacttaattaaata 17508556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 114
Target Start/End: Original strand, 25510160 - 25510211
Alignment:
Q  61 aggggaggggaggaattttaaaattattttactgttttacccttaaacttaatt 114  Q
    |||||| |||||  ||||||||||||||||||  ||||||||||||||||||||    
T  25510160 aggggaagggagagattttaaaattattttac--ttttacccttaaacttaatt 25510211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 114
Target Start/End: Original strand, 26046539 - 26046590
Alignment:
Q  61 aggggaggggaggaattttaaaattattttactgttttacccttaaacttaatt 114  Q
    |||||| |||||  ||||||||||||||||||  ||||||||||||||||||||    
T  26046539 aggggaagggagagattttaaaattattttac--ttttacccttaaacttaatt 26046590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 341 - 401
Alignment:
Q  60 aaggggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||||||  ||||||| | |||||||| |||||||||||||||||||||||||||    
T  341 aaggggaggggagagattttaacagtattttaccgttttacccttaaacttaattaaataa 401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 92907 - 92963
Alignment:
Q  64 ggaggggaggaattttaaaattattttactgttttacccttaaacttaattaaataa 120  Q
    |||||||||| ||||||| | |||||||| |||||||||||||||||||||||||||    
T  92907 ggaggggagggattttaacagtattttaccgttttacccttaaacttaattaaataa 92963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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