View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20701_low_1 (Length: 561)

Name: NF20701_low_1
Description: NF20701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20701_low_1
NF20701_low_1
[»] chr2 (1 HSPs)
chr2 (17-561)||(3489375-3489913)
[»] chr4 (1 HSPs)
chr4 (467-561)||(35549657-35549751)


Alignment Details
Target: chr2 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 17 - 561
Target Start/End: Complemental strand, 3489913 - 3489375
Alignment:
Q  17 aaaactaaatatcccagaagggctaataagttgctcttggcaaacaaaatacaaaagaaacttagattattattatgatgatgataaaattagtctagct 116  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||    
T  3489913 aaaactaaatatcccaaaagggctaataagttgctcttggcaaacaaaatacaaaagaaacttagattattattatgatgat---aaaattagtctagct 3489817  T
Q  117 tccccaagtagcccagttagcttcacttccgacacgtggcatcatttgattccttgactgagaatcaacattgaaattggccccacacataacaccctca 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3489816 tccccaagtagcccagttagcttcacttccgacacgtggcatcatttgattccttgactgagaatcaacattgaaattggccccacacataacaccctca 3489717  T
Q  217 ctgtcaatcctaggcattgctttcatcttcttggttggatgttcaaagttcaacagaccatgctcactatgaaacagacaccctgaaatttatgcattaa 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3489716 ctgtcaatcctaggcattgctttcatcttcttggttggatgttcaaagttcaacagaccatgctcactatgaaacagacaccctgaaatttatgcattaa 3489617  T
Q  317 attctattagtccgtagacaatttttcacattatctaagtaatagtaccaaattaaaaaatgcaacatgttattagtaattttttacaaaatcatttatg 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||    
T  3489616 attctattagtccgtagacaatttttcacattatctaagtaatagtaccaaattaaaaaatgcaacatgttattagtaa---tttacaaaatcatttatg 3489520  T
Q  417 atctttccatagggtagttaaaaaatcatgactttgcaaaccaaatttacataccagttggaaatggtgcaaatgatttagcacagctagcttttacaag 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3489519 atctttccatagggtagttaaaaaatcatgactttgcaaaccaaatttacataccagttggaaatggtgcaaatgatttagcacagctagcttttacaag 3489420  T
Q  517 ctccaaattttcagaaataaccacagaaccatcagcagcaatacc 561  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  3489419 ctccaaattttcagaaataaccacagaaccatcagcagcaatacc 3489375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 467 - 561
Target Start/End: Complemental strand, 35549751 - 35549657
Alignment:
Q  467 ataccagttggaaatggtgcaaatgatttagcacagctagcttttacaagctccaaattttcagaaataaccacagaaccatcagcagcaatacc 561  Q
    |||||||| || |||||||||||||| |||| |||||| ||||| | |||||||||||| ||||||||||| |||||||||||||| ||||||||    
T  35549751 ataccagtagggaatggtgcaaatgacttagaacagcttgctttaataagctccaaattctcagaaataacaacagaaccatcagctgcaatacc 35549657  T

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