View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20701_low_13 (Length: 247)
Name: NF20701_low_13
Description: NF20701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20701_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 99 - 232
Target Start/End: Original strand, 7633793 - 7633927
Alignment:
| Q |
99 |
gccaagagatcaatgatgatcctaagaagaatataagtaagcattttttgtgtgcgaaacagatatcttccgtagctcgtgtgcaattgtagatggtaaa |
198 |
Q |
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| T |
7633793 |
gccaagagatcaatgatgatcctaagaagaatataagtaagcattttttgtatgcgaaacagatatcttccgcagctcgtgtacaattgtagatagtaaa |
7633892 |
T |
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| Q |
199 |
ctctt-agtcggataaaatcacaatgggtacataa |
232 |
Q |
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| T |
7633893 |
ctcttgagtcggataaaatcacaatgggtacataa |
7633927 |
T |
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Target: chr1; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 7633652 - 7633751
Alignment:
| Q |
1 |
tagagaaccggtggtcgtgcacaagcaacatcaaatcatgcaacaagtataaaagtcattgtagctcacatgtgaccaatggtaatgctctatattttgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
7633652 |
tagagaaccggtggtcgtgcacaagcaacatcaaatcatgcaacaagtataaaagtcattgtagctcacatgtgactaatgataatgctctatattttgc |
7633751 |
T |
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