View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20701_low_4 (Length: 452)
Name: NF20701_low_4
Description: NF20701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20701_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 13 - 394
Target Start/End: Complemental strand, 29020723 - 29020342
Alignment:
| Q |
13 |
atattcaacataagacttgccaggaatgaaaatctacatgacaatactacttccataataattagaagacatttttactatctattcttgtattgaattt |
112 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29020723 |
atattcaacataagacttgctaggaatgaaaatctacatgacaatactacttccataataattagaagacatttttactatctattcttgtattgaattt |
29020624 |
T |
|
| Q |
113 |
tcttagtcaagaattaatcattcatccacggtacaaacctattttgtggcctaaaaagaatttaaccatccatccatagaagggttatttcttccttccc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29020623 |
tcttagtcaagaattaatcattcatccacggtacaaacctattttgtggcctaaaaagaatttaaccatccatccatagaagggttatttcttccttccc |
29020524 |
T |
|
| Q |
213 |
catgctgcttggatcaaagctaacactggtggcacaactataggggctctaaatttctctctttgttaaattagtgacaactatgcatgctatcaaaatt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29020523 |
catgctgcttggatcaaagctaacactggtggcacaactataggggctctaaatttctctctttgttaaattagtgacaactatgcatgctatcaaaatt |
29020424 |
T |
|
| Q |
313 |
gcaaatcagaataattgacataatttttgttttgaatgtgactcaaagctagtggttgatgccttaaaaaatcatcatatta |
394 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
29020423 |
gctaatcagaataattgacataatttttgttttgaatgtgactcaaagctagtggttgatgccttaaaaaatcataatatta |
29020342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University