View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20701_low_5 (Length: 452)
Name: NF20701_low_5
Description: NF20701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20701_low_5 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 116; Significance: 8e-59; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 313 - 452
Target Start/End: Original strand, 48956223 - 48956357
Alignment:
| Q |
313 |
agttgtcttgttgtgttctgtgtcgatttgtatcacagtcatgcaaaacatggcgatgacacgttgccagatcactcaatctctgaaactgaatcaaagc |
412 |
Q |
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| T |
48956223 |
agttgtcttgttgtgttctgtgtcgatttgtatcacagtcatgcaaaacatggcgatga-----tgccagatcactcaatctctgaaacagaatcaaagc |
48956317 |
T |
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| Q |
413 |
aaagaaggaaaatggaggagatgaaggaagaagcagcctt |
452 |
Q |
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| T |
48956318 |
aaagaaggaaaatggaggagatgaaggaagaagcagcctt |
48956357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 48955910 - 48956036
Alignment:
| Q |
16 |
ataaccaaaaggagacataattaaggattgaatcagatctgaaggaaaaggtaaaggtaggaatgtgtccattaattaatggaagaaaaacaaaaatgtg |
115 |
Q |
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| T |
48955910 |
ataaccaaaaggagacacaattaaggattgaatcaaatctgaaggaaaaggtaaaggtaggaatgtgtcc----attaatggaagaaaaacaaaaatgtg |
48956005 |
T |
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| Q |
116 |
gatctatacggacatattagggtttgcttcc |
146 |
Q |
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| T |
48956006 |
gatctatacggacatattagggtttggttcc |
48956036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 202 - 294
Target Start/End: Original strand, 48956092 - 48956198
Alignment:
| Q |
202 |
tcacacaagtccaggtccaaattcaacaaaagcctactctct--------------ttttctcttttcatgtcattgatttaagtgtggtgccgtgatta |
287 |
Q |
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| T |
48956092 |
tcacacaagtgcaggtccaaattcaacaaaagcctactctctctctctctctctccttttctcttttcatgtcattgatttaagtgtggtgccgtgatta |
48956191 |
T |
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| Q |
288 |
gactgct |
294 |
Q |
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| T |
48956192 |
gactgct |
48956198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 407 - 452
Target Start/End: Original strand, 30533788 - 30533833
Alignment:
| Q |
407 |
caaagcaaagaaggaaaatggaggagatgaaggaagaagcagcctt |
452 |
Q |
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| T |
30533788 |
caaagcaaagaaggaaaatggaggagatgaaggaagaagcagcctt |
30533833 |
T |
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