View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20701_low_7 (Length: 355)

Name: NF20701_low_7
Description: NF20701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20701_low_7
NF20701_low_7
[»] chr8 (6 HSPs)
chr8 (5-355)||(38058865-38059198)
chr8 (5-52)||(38065886-38065933)
chr8 (289-335)||(24681423-24681469)
chr8 (289-355)||(29275385-29275451)
chr8 (289-320)||(41279722-41279753)
chr8 (294-330)||(29260363-29260399)
[»] chr2 (6 HSPs)
chr2 (74-243)||(39928694-39928863)
chr2 (76-270)||(39704485-39704679)
chr2 (80-270)||(39695576-39695763)
chr2 (153-281)||(39934420-39934548)
chr2 (292-355)||(80466-80528)
chr2 (291-335)||(13438184-13438228)
[»] chr6 (7 HSPs)
chr6 (289-355)||(12877785-12877850)
chr6 (289-335)||(2936644-2936690)
chr6 (291-330)||(14579001-14579040)
chr6 (288-355)||(15951541-15951607)
chr6 (289-355)||(3836117-3836183)
chr6 (289-325)||(20759303-20759339)
chr6 (289-328)||(16712929-16712968)
[»] chr4 (9 HSPs)
chr4 (289-355)||(31768259-31768324)
chr4 (289-355)||(6664397-6664463)
chr4 (288-352)||(13250971-13251034)
chr4 (289-355)||(580611-580676)
chr4 (289-355)||(26947467-26947532)
chr4 (289-355)||(6685778-6685841)
chr4 (289-331)||(572231-572273)
chr4 (289-332)||(6682323-6682366)
chr4 (289-320)||(31889463-31889494)
[»] scaffold0321 (1 HSPs)
scaffold0321 (289-355)||(17970-18035)
[»] scaffold0019 (1 HSPs)
scaffold0019 (289-335)||(174071-174117)
[»] scaffold0933 (1 HSPs)
scaffold0933 (287-335)||(1579-1627)
[»] chr7 (3 HSPs)
chr7 (289-355)||(37006261-37006326)
chr7 (289-328)||(38414115-38414154)
chr7 (290-320)||(2432387-2432417)
[»] chr3 (2 HSPs)
chr3 (289-355)||(6240633-6240698)
chr3 (289-332)||(26361893-26361936)
[»] chr1 (4 HSPs)
chr1 (288-355)||(27793812-27793879)
chr1 (289-355)||(48715051-48715116)
chr1 (289-320)||(29402461-29402492)
chr1 (309-355)||(8753669-8753714)
[»] chr5 (4 HSPs)
chr5 (289-328)||(28152141-28152180)
chr5 (289-320)||(25635538-25635569)
chr5 (294-355)||(1354215-1354275)
chr5 (287-316)||(25644659-25644688)


Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 5 - 355
Target Start/End: Original strand, 38058865 - 38059198
Alignment:
Q  5 acataccatattgatctttcacatgaagtaggatcaataacttcaacgttgattactccaaccatagcagtgataacatttatcataacattacattctc 104  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  38058865 acatatcatattgatctttcacatgaagtaggatcaataacttcaacgttgattactccaaccatagcagtgataacatttatcataacattacatcctc 38058964  T
Q  105 ttacacattttcatacttgtaaacagaagaacaaaataagtaatacctaaagttgatacccccaaatacaaccaacatccaatacacattatcaagtttc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               |||    
T  38058965 ttacacattttcatacttgtaaacagaagaacaaaataagtaatacctaaagttgatacccccaaatacaaccaacatccaa---------------ttc 38059049  T
Q  205 ccatgatttatgtcatctggtaaccaattagtaatcctatggatttggtcaactaaagtagtgctcgagttaaaagcgattttatgttgtaaattttgat 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  38059050 ccatgatttatgtcatctggtaaccaattagtaatcctatggatttggtcaactaaagtagtgctcaagttaaaagcgattttatgttgtaaattttgat 38059149  T
Q  305 tatatttcaaaagtttcaaatattttgtgtcacattatttttaattgagaa 355  Q
    |||| ||||||||||| |||||||||||||||||||| |||||||||||||    
T  38059150 tata-ttcaaaagttttaaatattttgtgtcacatta-ttttaattgagaa 38059198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 38065886 - 38065933
Alignment:
Q  5 acataccatattgatctttcacatgaagtaggatcaataacttcaacg 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38065886 acataccatattgatctttcacatgaagtaggatcaataacttcaacg 38065933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 289 - 335
Target Start/End: Complemental strand, 24681469 - 24681423
Alignment:
Q  289 tgttgtaaattttgattatatttcaaaagtttcaaatattttgtgtc 335  Q
    ||||| ||||||||| ||||||||||||||| |||||||||||||||    
T  24681469 tgttgcaaattttgaatatatttcaaaagttacaaatattttgtgtc 24681423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 289 - 355
Target Start/End: Original strand, 29275385 - 29275451
Alignment:
Q  289 tgttgtaaattttgattatatttcaaaagtttcaaata-ttttgtgtcacattatttttaattgagaa 355  Q
    ||||||||||||||  |||||||||||||||||||| | |||| |||| || ||||||||||||||||    
T  29275385 tgttgtaaattttgtgtatatttcaaaagtttcaaacatttttttgtctca-tatttttaattgagaa 29275451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 289 - 320
Target Start/End: Complemental strand, 41279753 - 41279722
Alignment:
Q  289 tgttgtaaattttgattatatttcaaaagttt 320  Q
    ||||||||||||||||||||||||||||||||    
T  41279753 tgttgtaaattttgattatatttcaaaagttt 41279722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 29260363 - 29260399
Alignment:
Q  294 taaattttgattatatttcaaaagtttcaaatatttt 330  Q
    |||||||||  ||||||||||||||||||||||||||    
T  29260363 taaattttgtgtatatttcaaaagtttcaaatatttt 29260399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 74 - 243
Target Start/End: Original strand, 39928694 - 39928863
Alignment:
Q  74 gtgataacatttatcataacattacattctcttacacattttcatacttgtaaacagaagaacaaaataagtaatacctaaagttgatacccccaaatac 173  Q
    |||||||||||||||||||||| |||| |||||| ||||||||||||||||||  ||||||||||||||||||||||  |||||| |||||||| | ||     
T  39928694 gtgataacatttatcataacatcacatcctcttaaacattttcatacttgtaaggagaagaacaaaataagtaatacacaaagtttatacccccgagtag 39928793  T
Q  174 aaccaacatccaatacacattatcaagtttcccatgatttatgtcatctggtaaccaattagtaatccta 243  Q
     || |||||||| |||||||| ||||  |||||||||||||||||||| |||||||||| |||| |||||    
T  39928794 gactaacatccagtacacattgtcaatcttcccatgatttatgtcatcaggtaaccaatcagtactccta 39928863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 76 - 270
Target Start/End: Complemental strand, 39704679 - 39704485
Alignment:
Q  76 gataacatttatcataacattacattctcttacacattttcatacttgtaaacagaagaacaaaataagtaatacctaaagttgatacccccaaatacaa 175  Q
    ||||||||| |||||||||| | |  |||||| ||||||||||||||||||  |  ||| || | ||||||||||  |||||||||| | ||||| |  |    
T  39704679 gataacattcatcataacatcataacctcttaaacattttcatacttgtaagaaatagagcacagtaagtaatacacaaagttgatagctccaaacatga 39704580  T
Q  176 ccaacatccaatacacattatcaagtttcccatgatttatgtcatctggtaaccaattagtaatcctatggatttggtcaactaaagtagtgctc 270  Q
    ||||||||||||||||||||||||  || ||||||||||| ||||| |||||||||| |||| ||||| | | |||||||| ||||| |||||||    
T  39704579 ccaacatccaatacacattatcaaccttgccatgatttatttcatcaggtaaccaatcagtactcctacgaacttggtcaattaaagcagtgctc 39704485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 80 - 270
Target Start/End: Complemental strand, 39695763 - 39695576
Alignment:
Q  80 acatttatcataacattacattctcttacacattttcatacttgtaaacagaagaacaaaataagtaatacctaaagttgatacccccaaatacaaccaa 179  Q
    |||||||||||||||| |||| ||   | ||||||||||||||||||  |  ||| || |||| |||||||  |||||||||||| ||||| || || ||    
T  39695763 acatttatcataacatcacatcct---aaacattttcatacttgtaagaaatagagcacaataggtaatacacaaagttgatacctccaaacactactaa 39695667  T
Q  180 catccaatacacattatcaagtttcccatgatttatgtcatctggtaaccaattagtaatcctatggatttggtcaactaaagtagtgctc 270  Q
    ||||||||||||||||||||  || ||||||||||| ||||| |||||||||| |||| ||||| | | |||||||| ||||| |||||||    
T  39695666 catccaatacacattatcaaccttgccatgatttatttcatcaggtaaccaatcagtactcctacgaacttggtcaattaaagcagtgctc 39695576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 153 - 281
Target Start/End: Original strand, 39934420 - 39934548
Alignment:
Q  153 aaagttgatacccccaaatacaaccaacatccaatacacattatcaagtttcccatgatttatgtcatctggtaaccaattagtaatcctatggatttgg 252  Q
    |||||||||| | ||||| || || ||||||||||||||||||||||  || ||||||||||| ||||| |||||||||| |||| ||||| | | ||||    
T  39934420 aaagttgatagctccaaacacgactaacatccaatacacattatcaaccttgccatgatttatttcatcaggtaaccaatcagtactcctacgaacttgg 39934519  T
Q  253 tcaactaaagtagtgctcgagttaaaagc 281  Q
    |||| ||||| ||||||| ||| ||||||    
T  39934520 tcaattaaagcagtgctcaagtaaaaagc 39934548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 292 - 355
Target Start/End: Original strand, 80466 - 80528
Alignment:
Q  292 tgtaaattttgattatatttcaaaagtttcaaatattttgtgtcacattatttttaattgagaa 355  Q
    |||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  80466 tgtaaattttgagtatatttcaaaagtttcaaatattttgtgtccca-tatttttaattgagaa 80528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 13438228 - 13438184
Alignment:
Q  291 ttgtaaattttgattatatttcaaaagtttcaaatattttgtgtc 335  Q
    ||||||||||||| ||||||||||||||||  |||||||||||||    
T  13438228 ttgtaaattttgaatatatttcaaaagttttgaatattttgtgtc 13438184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 289 - 355
Target Start/End: Complemental strand, 12877850 - 12877785
Alignment:
Q  289 tgttgtaaattttgattatatttcaaaagtttcaaatattttgtgtcacattatttttaattgagaa 355  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  12877850 tgttgtaaattttgagtatatttcaaaagtttcaaatattttgtgtccca-tatttttaattgagaa 12877785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 289 - 335
Target Start/End: Complemental strand, 2936690 - 2936644
Alignment:
Q  289 tgttgtaaattttgattatatttcaaaagtttcaaatattttgtgtc 335  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||    
T  2936690 tgttgtaaattttgattatatttcaaaaatttcaaatattttgtgtc 2936644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 330
Target Start/End: Original strand, 14579001 - 14579040
Alignment:
Q  291 ttgtaaattttgattatatttcaaaagtttcaaatatttt 330  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  14579001 ttgtaaattttgattatatttcaaaagtttcaaatatttt 14579040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 288 - 355
Target Start/End: Original strand, 15951541 - 15951607
Alignment:
Q  288 atgttgtaaattttgattatatttcaaaagtttcaaatattttgtgtcacattatttttaattgagaa 355  Q
    ||||| |||||||||| |||||||||||||||| ||||| |||||||| || ||||||||||||||||    
T  15951541 atgttctaaattttgagtatatttcaaaagttttaaataatttgtgtccca-tatttttaattgagaa 15951607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 289 - 355
Target Start/End: Complemental strand, 3836183 - 3836117
Alignment:
Q  289 tgttgtaaattttgattatatttcaaaagtttcaaata-ttttgtgtcacattatttttaattgagaa 355  Q
    |||||||||||||||  ||||||||||||||||||||| ||||||||  || ||||||||||||||||    
T  3836183 tgttgtaaattttgaacatatttcaaaagtttcaaatatttttgtgttcca-tatttttaattgagaa 3836117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 325
Target Start/End: Complemental strand, 20759339 - 20759303
Alignment:
Q  289 tgttgtaaattttgattatatttcaaaagtttcaaat 325  Q
    ||||||||||||||| |||||||||||||||||||||    
T  20759339 tgttgtaaattttgagtatatttcaaaagtttcaaat 20759303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 289 - 328
Target Start/End: Complemental strand, 16712968 - 16712929
Alignment:
Q  289 tgttgtaaattttgattatatttcaaaagtttcaaatatt 328  Q
    |||||||||||||||| ||||||||||||||| |||||||    
T  16712968 tgttgtaaattttgataatatttcaaaagttttaaatatt 16712929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 289 - 355
Target Start/End: Complemental strand, 31768324 - 31768259
Alignment:
Q  289 tgttgtaaattttgattatatttcaaaagtttcaaatattttgtgtcacattatttttaattgagaa 355  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  31768324 tgttgtaaattttgagtatatttcaaaagtttcaaatattttgtgtccca-tatttttaattgagaa 31768259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 289 - 355
Target Start/End: Complemental strand, 6664463 - 6664397
Alignment:
Q  289 tgttgtaaattttgattatatttcaaaagtttcaaatattttgtgtcacattatttttaattgagaa 355  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||| |||  ||||||||||||||    
T  6664463 tgttgtaaattttgagtgtatttcaaaagtttcaaatattttgtgtcccatattttttaattgagaa 6664397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 288 - 352
Target Start/End: Complemental strand, 13251034 - 13250971
Alignment:
Q  288 atgttgtaaattttgattatatttcaaaagtttcaaatattttgtgtcacattatttttaattga 352  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| || |||||| ||||||    
T  13251034 atgttgtaaattttgattatatttcaaaagtttcaaatattttatgtccca-tattttcaattga 13250971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 289 - 355
Target Start/End: Complemental strand, 580676 - 580611
Alignment:
Q  289 tgttgtaaattttgattatatttcaaaagtttcaaatattttgtgtcacattatttttaattgagaa 355  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||| || |||||| |||||||||    
T  580676 tgttgtaaattttgagtatatttcaaaagttttaaatattttgtgtccca-tattttcaattgagaa 580611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 289 - 355
Target Start/End: Original strand, 26947467 - 26947532
Alignment:
Q  289 tgttgtaaattttgattatatttcaaaagtttcaaatattttgtgtcacattatttttaattgagaa 355  Q
    |||||||||||||||||||||||||||||| | |||||||||||||| || |||||| |||||||||    
T  26947467 tgttgtaaattttgattatatttcaaaagtctaaaatattttgtgtccca-tattttcaattgagaa 26947532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 289 - 355
Target Start/End: Original strand, 6685778 - 6685841
Alignment:
Q  289 tgttgtaaattttgattatatttcaaaagtttcaaatattttgtgtcacattatttttaattgagaa 355  Q
    ||||||||||||||| ||||||||||||||||||||||||||||  ||   ||||||||||||||||    
T  6685778 tgttgtaaattttgagtatatttcaaaagtttcaaatattttgtccca---tatttttaattgagaa 6685841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 289 - 331
Target Start/End: Complemental strand, 572273 - 572231
Alignment:
Q  289 tgttgtaaattttgattatatttcaaaagtttcaaatattttg 331  Q
    ||||||||||||||| ||||||||||||||||| |||||||||    
T  572273 tgttgtaaattttgagtatatttcaaaagtttctaatattttg 572231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 289 - 332
Target Start/End: Original strand, 6682323 - 6682366
Alignment:
Q  289 tgttgtaaattttgattatatttcaaaagtttcaaatattttgt 332  Q
    |||| |||||||||| ||||||| ||||||||||||||||||||    
T  6682323 tgttataaattttgagtatattttaaaagtttcaaatattttgt 6682366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 289 - 320
Target Start/End: Original strand, 31889463 - 31889494
Alignment:
Q  289 tgttgtaaattttgattatatttcaaaagttt 320  Q
    ||||||||||||||||||||||||||||||||    
T  31889463 tgttgtaaattttgattatatttcaaaagttt 31889494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 289 - 355
Target Start/End: Original strand, 17970 - 18035
Alignment:
Q  289 tgttgtaaattttgattatatttcaaaagtttcaaatattttgtgtcacattatttttaattgagaa 355  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  17970 tgttgtaaattttaagtatatttcaaaagtttcaaatattttgtgtccca-tatttttaattgagaa 18035  T

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Target: scaffold0019 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 289 - 335
Target Start/End: Original strand, 174071 - 174117
Alignment:
Q  289 tgttgtaaattttgattatatttcaaaagtttcaaatattttgtgtc 335  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  174071 tgttgtaaattttgattatatttcaaaagtttcaaatattttgtgtc 174117  T

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Target: scaffold0933 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 287 - 335
Target Start/End: Complemental strand, 1627 - 1579
Alignment:
Q  287 tatgttgtaaattttgattatatttcaaaagtttcaaatattttgtgtc 335  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1627 tatgttgtaaattttgattatattttaaaagtttcaaatattttgtgtc 1579  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 289 - 355
Target Start/End: Original strand, 37006261 - 37006326
Alignment:
Q  289 tgttgtaaattttgattatatttcaaaagtttcaaatattttgtgtcacattatttttaattgagaa 355  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||| || ||||||||||| ||||    
T  37006261 tgttgtaaattttgagtatattttaaaagtttcaaatattttgtgtccca-tatttttaatttagaa 37006326  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 289 - 328
Target Start/End: Original strand, 38414115 - 38414154
Alignment:
Q  289 tgttgtaaattttgattatatttcaaaagtttcaaatatt 328  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  38414115 tgttgtaaattttgagtatatttcaaaagttttaaatatt 38414154  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 320
Target Start/End: Original strand, 2432387 - 2432417
Alignment:
Q  290 gttgtaaattttgattatatttcaaaagttt 320  Q
    |||||||||||||||||||||||||||||||    
T  2432387 gttgtaaattttgattatatttcaaaagttt 2432417  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 289 - 355
Target Start/End: Complemental strand, 6240698 - 6240633
Alignment:
Q  289 tgttgtaaattttgattatatttcaaaagtttcaaatattttgtgtcacattatttttaattgagaa 355  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||| |  ||||||||||||||||    
T  6240698 tgttgtaaattttgagtatatttcaaaagttttaaatattttgtgtc-ctatatttttaattgagaa 6240633  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 289 - 332
Target Start/End: Original strand, 26361893 - 26361936
Alignment:
Q  289 tgttgtaaattttgattatatttcaaaagtttcaaatattttgt 332  Q
    |||||||| |||||| ||||||||||||||||||||||||||||    
T  26361893 tgttgtaatttttgagtatatttcaaaagtttcaaatattttgt 26361936  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 288 - 355
Target Start/End: Complemental strand, 27793879 - 27793812
Alignment:
Q  288 atgttgtaaattttgattatatttcaaaagtttcaaatattttgtgtcacattatttttaattgagaa 355  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||  |||  ||||||||| ||||    
T  27793879 atgttgtaaattttgagtatatttcaaaagttttaaatattttgtgttccatattttttaattaagaa 27793812  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 289 - 355
Target Start/End: Complemental strand, 48715116 - 48715051
Alignment:
Q  289 tgttgtaaattttgattatatttcaaaagtttcaaatattttgtgtcacattatttttaattgagaa 355  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||  || |||||| |||||||||    
T  48715116 tgttgtaaattttgagtatatttcaaaagtttcaaataatttgtgttcca-tattttcaattgagaa 48715051  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 289 - 320
Target Start/End: Complemental strand, 29402492 - 29402461
Alignment:
Q  289 tgttgtaaattttgattatatttcaaaagttt 320  Q
    ||||||||||||||||||||||||||||||||    
T  29402492 tgttgtaaattttgattatatttcaaaagttt 29402461  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 355
Target Start/End: Complemental strand, 8753714 - 8753669
Alignment:
Q  309 tttcaaaagtttcaaatattttgtgtcacattatttttaattgagaa 355  Q
    ||||||||||||||||||||||||||| || ||| ||||||||||||    
T  8753714 tttcaaaagtttcaaatattttgtgtccca-tatatttaattgagaa 8753669  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 289 - 328
Target Start/End: Complemental strand, 28152180 - 28152141
Alignment:
Q  289 tgttgtaaattttgattatatttcaaaagtttcaaatatt 328  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  28152180 tgttgtaaattttgagtatatttcaaaagtttcaaatatt 28152141  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 289 - 320
Target Start/End: Complemental strand, 25635569 - 25635538
Alignment:
Q  289 tgttgtaaattttgattatatttcaaaagttt 320  Q
    ||||||||||||||||||||||||||||||||    
T  25635569 tgttgtaaattttgattatatttcaaaagttt 25635538  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 355
Target Start/End: Complemental strand, 1354275 - 1354215
Alignment:
Q  294 taaattttgattatatttcaaaagtttcaaatattttgtgtcacattatttttaattgagaa 355  Q
    |||||||| | |||||||||||||||| |||||  ||||||| || ||||||||||||||||    
T  1354275 taaattttaaatatatttcaaaagttttaaataccttgtgtctca-tatttttaattgagaa 1354215  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 316
Target Start/End: Complemental strand, 25644688 - 25644659
Alignment:
Q  287 tatgttgtaaattttgattatatttcaaaa 316  Q
    ||||||||||||||||||||||||||||||    
T  25644688 tatgttgtaaattttgattatatttcaaaa 25644659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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