View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20702_high_10 (Length: 395)

Name: NF20702_high_10
Description: NF20702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20702_high_10
NF20702_high_10
[»] chr3 (10 HSPs)
chr3 (19-228)||(26390427-26390634)
chr3 (240-394)||(26391183-26391337)
chr3 (106-241)||(36684933-36685068)
chr3 (106-189)||(51976840-51976923)
chr3 (107-241)||(47165294-47165428)
chr3 (304-394)||(8705212-8705302)
chr3 (304-394)||(9057099-9057189)
chr3 (108-189)||(8705792-8705873)
chr3 (108-189)||(9057679-9057760)
chr3 (122-189)||(45736546-45736613)
[»] chr5 (7 HSPs)
chr5 (106-241)||(41197304-41197439)
chr5 (106-189)||(12378556-12378639)
chr5 (104-181)||(36779349-36779426)
chr5 (111-241)||(30376380-30376510)
chr5 (107-218)||(34905626-34905737)
chr5 (108-181)||(39714912-39714985)
chr5 (240-385)||(34905083-34905227)
[»] chr1 (7 HSPs)
chr1 (111-241)||(21515231-21515361)
chr1 (106-241)||(11351545-11351680)
chr1 (111-189)||(6784358-6784436)
chr1 (337-394)||(20639090-20639147)
chr1 (337-381)||(11352151-11352195)
chr1 (110-187)||(25396209-25396286)
chr1 (120-189)||(32988848-32988917)
[»] chr2 (4 HSPs)
chr2 (106-189)||(24543293-24543376)
chr2 (114-241)||(29894277-29894404)
chr2 (111-189)||(36365120-36365198)
chr2 (108-230)||(33722394-33722517)
[»] chr4 (5 HSPs)
chr4 (106-189)||(43989206-43989289)
chr4 (337-394)||(43989811-43989868)
chr4 (105-241)||(19315837-19315973)
chr4 (271-385)||(19316378-19316488)
chr4 (159-241)||(1394153-1394236)
[»] chr8 (3 HSPs)
chr8 (114-189)||(18481313-18481388)
chr8 (108-154)||(32535911-32535957)
chr8 (337-387)||(18480740-18480790)
[»] chr6 (1 HSPs)
chr6 (106-189)||(942773-942856)
[»] chr7 (2 HSPs)
chr7 (304-394)||(24809276-24809366)
chr7 (173-240)||(40901820-40901887)
[»] scaffold0042 (1 HSPs)
scaffold0042 (329-394)||(88809-88874)
[»] scaffold0041 (1 HSPs)
scaffold0041 (173-240)||(48131-48198)


Alignment Details
Target: chr3 (Bit Score: 134; Significance: 1e-69; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 26390427 - 26390634
Alignment:
Q  19 aacctgccatattttaaactcaacaacatttgatgttaagaaggcaaaagtttgaaacataaatgatataagagcannnnnnnnnagggaagaaattcat 118  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||         |||||||||||||||    
T  26390427 aacctgccatattttaaactcaacgacatttgatgttaagaaggcaaaagtgtgaaacataaatgatataagagcattttttt--agggaagaaattcat 26390524  T
Q  119 tgtttttcattagctatcaactatctaatacatgatcatacattatcataaacgtgggagctagcatgagacgggattacatgtgttaattcatgagcga 218  Q
    || ||||||||||||||||||| |||||||||||| | |||||||||||||||||| ||| ||||||||||||||| |||||||| ||||||||||||||    
T  26390525 tgattttcattagctatcaactgtctaatacatgaccttacattatcataaacgtgagagttagcatgagacgggactacatgtgctaattcatgagcga 26390624  T
Q  219 tcctattaac 228  Q
    ||| ||||||    
T  26390625 tcccattaac 26390634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 240 - 394
Target Start/End: Original strand, 26391183 - 26391337
Alignment:
Q  240 tgctagaaccactcagatgagtagagcagtcagtttctctatgtgatctcccaccttgagtttctctccaatcatctagaaggtgcatagcacgctaaac 339  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  26391183 tgctagaaccactcagatgagtagaggagtcagtttctctatgtgatctcccaccttgagtttctttccaatcatctaggaggtgcatagcacgctaaac 26391282  T
Q  340 aacctgcagacttgtttcattttgctgttgccacaattttaagttcctatgcttc 394  Q
    ||||||||||||| ||||||||||||  ||||||||||||||||||||| |||||    
T  26391283 aacctgcagacttatttcattttgctactgccacaattttaagttcctacgcttc 26391337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 106 - 241
Target Start/End: Complemental strand, 36685068 - 36684933
Alignment:
Q  106 ggaagaaattcattgtttttcattagctatcaactatctaatacatgatcatacattatcataaacgtgggagctagcatgagacgggattacatgtgtt 205  Q
    |||| |||||||||| ||||||||||||||||| | || |||||||||   ||||| |||||||||||| |||||||||||||| |||  |||    | |    
T  36685068 ggaaaaaattcattgcttttcattagctatcaagtctcgaatacatgacggtacatcatcataaacgtgagagctagcatgagatggggctaccctagct 36684969  T
Q  206 aattcatgagcgatcctattaacttgcctcctattg 241  Q
    ||||||||||||| || |||| ||||||||||||||    
T  36684968 aattcatgagcgaccccattagcttgcctcctattg 36684933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 106 - 189
Target Start/End: Complemental strand, 51976923 - 51976840
Alignment:
Q  106 ggaagaaattcattgtttttcattagctatcaactatctaatacatgatcatacattatcataaacgtgggagctagcatgaga 189  Q
    |||| |||||||||| ||||||||||||||||| | || |||||||||   ||||| |||||||||||||||||||||||||||    
T  51976923 ggaaaaaattcattgcttttcattagctatcaagtctcgaatacatgacggtacatcatcataaacgtgggagctagcatgaga 51976840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 107 - 241
Target Start/End: Original strand, 47165294 - 47165428
Alignment:
Q  107 gaagaaattcattgtttttcattagctatcaactatctaatacatgatcatacattatcataaacgtgggagctagcatgagacgggattacatgtgtta 206  Q
    |||||||||||||| ||||||||| ||||||| | |  |||||||||   ||||| | | ||||||||||||||||||||||| |||  | | | |  ||    
T  47165294 gaagaaattcattgcttttcattaactatcaaatgttcaatacatgacgctacatcaccgtaaacgtgggagctagcatgagatggggctgcctttccta 47165393  T
Q  207 attcatgagcgatcctattaacttgcctcctattg 241  Q
    ||||| |||||| || ||| |||||||||||||||    
T  47165394 attcacgagcgaccccattgacttgcctcctattg 47165428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 394
Target Start/End: Complemental strand, 8705302 - 8705212
Alignment:
Q  304 tctccaatcatctagaaggtgcatagcacgctaaacaacctgcagacttgtttcattttgctgttgccacaattttaagttcctatgcttc 394  Q
    ||||||||| ||||  |||||| |||| || |  |||||||||| || |||||||||||| ||||| ||||||||||| |||||| |||||    
T  8705302 tctccaatcttctaagaggtgcctagcccgttccacaacctgcacacatgtttcattttgttgttgtcacaattttaaattcctacgcttc 8705212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 394
Target Start/End: Complemental strand, 9057189 - 9057099
Alignment:
Q  304 tctccaatcatctagaaggtgcatagcacgctaaacaacctgcagacttgtttcattttgctgttgccacaattttaagttcctatgcttc 394  Q
    ||||||||| ||||  |||||| |||| || |  |||||||||| || |||||||||||| ||||| ||||||||||| |||||| |||||    
T  9057189 tctccaatcttctaagaggtgcctagcccgttccacaacctgcacacatgtttcattttgttgttgtcacaattttaaattcctacgcttc 9057099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 108 - 189
Target Start/End: Complemental strand, 8705873 - 8705792
Alignment:
Q  108 aagaaattcattgtttttcattagctatcaactatctaatacatgatcatacattatcataaacgtgggagctagcatgaga 189  Q
    |||||||||| || ||||||||| | ||||| | ||  |||||||||  ||||| |||||||||||||||||||| ||||||    
T  8705873 aagaaattcaatgcttttcattaaccatcaaatctcggatacatgatggtacatcatcataaacgtgggagctagtatgaga 8705792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 108 - 189
Target Start/End: Complemental strand, 9057760 - 9057679
Alignment:
Q  108 aagaaattcattgtttttcattagctatcaactatctaatacatgatcatacattatcataaacgtgggagctagcatgaga 189  Q
    |||||||||| || ||||||||| | ||||| | ||  |||||||||  ||||| |||||||||||||||||||| ||||||    
T  9057760 aagaaattcaatgcttttcattaaccatcaaatctcggatacatgatggtacatcatcataaacgtgggagctagtatgaga 9057679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 122 - 189
Target Start/End: Complemental strand, 45736613 - 45736546
Alignment:
Q  122 ttttcattagctatcaactatctaatacatgatcatacattatcataaacgtgggagctagcatgaga 189  Q
    ||||||||||||||||| | ||  ||||||||   ||||| |||||||||||||||| ||||||||||    
T  45736613 ttttcattagctatcaagtctcggatacatgacggtacatcatcataaacgtgggagttagcatgaga 45736546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 106 - 241
Target Start/End: Original strand, 41197304 - 41197439
Alignment:
Q  106 ggaagaaattcattgtttttcattagctatcaactatctaatacatgatcatacattatcataaacgtgggagctagcatgagacgggattacatgtgtt 205  Q
    |||| |||||||||| ||||||||||||||||| | || |||||||||   ||||| ||||||||||||||||||||||||||| |||  |||    | |    
T  41197304 ggaaaaaattcattgcttttcattagctatcaagtctcgaatacatgacggtacatcatcataaacgtgggagctagcatgagatggggctaccctagct 41197403  T
Q  206 aattcatgagcgatcctattaacttgcctcctattg 241  Q
    ||||||||||||| || |||  ||||||||||||||    
T  41197404 aattcatgagcgaccccattggcttgcctcctattg 41197439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 106 - 189
Target Start/End: Original strand, 12378556 - 12378639
Alignment:
Q  106 ggaagaaattcattgtttttcattagctatcaactatctaatacatgatcatacattatcataaacgtgggagctagcatgaga 189  Q
    |||| |||||||||| ||||||||||||||||| | || |||||||||   ||||| |||||||||||||||||||||||||||    
T  12378556 ggaaaaaattcattgcttttcattagctatcaagtctcgaatacatgacggtacatcatcataaacgtgggagctagcatgaga 12378639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 104 - 181
Target Start/End: Original strand, 36779349 - 36779426
Alignment:
Q  104 agggaagaaattcattgtttttcattagctatcaactatctaatacatgatcatacattatcataaacgtgggagcta 181  Q
    ||||||||||||||||||||||||||||||||||| | ||  ||||||||  |||||| |||||| ||||||||||||    
T  36779349 agggaagaaattcattgtttttcattagctatcaaatctcagatacatgacgatacatcatcatagacgtgggagcta 36779426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 241
Target Start/End: Original strand, 30376380 - 30376510
Alignment:
Q  111 aaattcattgtttttcattagctatcaactatctaatacatgatcatacattatcataaacgtgggagctagcatgagacgggattacatgtgttaattc 210  Q
    |||||||||| ||||||||||||||||| | ||  ||||||||   ||||| ||||||||||| ||||||||||||||| | |  |||    | ||||||    
T  30376380 aaattcattgcttttcattagctatcaagtctcggatacatgacggtacatcatcataaacgttggagctagcatgagatgaggctaccgtagctaattc 30376479  T
Q  211 atgagcgatcctattaacttgcctcctattg 241  Q
    |||||||| ||||||  ||||||||||||||    
T  30376480 atgagcgaccctattggcttgcctcctattg 30376510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 107 - 218
Target Start/End: Complemental strand, 34905737 - 34905626
Alignment:
Q  107 gaagaaattcattgtttttcattagctatcaactatctaatacatgatcatacattatcataaacgtgggagctagcatgagacgggattacatgtgtta 206  Q
    |||||||||||||||||||||||||||||||| | |  |||| |||||  | ||| ||| ||||| |||||| ||||||||||  ||  ||| || | ||    
T  34905737 gaagaaattcattgtttttcattagctatcaaatgttcaatatatgatggtccatcatcgtaaacttgggagttagcatgagatcgggctacttgggcta 34905638  T
Q  207 attcatgagcga 218  Q
    ||||||||||||    
T  34905637 attcatgagcga 34905626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 108 - 181
Target Start/End: Complemental strand, 39714985 - 39714912
Alignment:
Q  108 aagaaattcattgtttttcattagctatcaactatctaatacatgatcatacattatcataaacgtgggagcta 181  Q
    ||||||||||| |||||||||||  |||||| ||| ||||| |||| | ||||| |||||||||||| ||||||    
T  39714985 aagaaattcatagtttttcattaaatatcaattatttaatatatgaccgtacatcatcataaacgtgagagcta 39714912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 385
Target Start/End: Complemental strand, 34905227 - 34905083
Alignment:
Q  240 tgctagaaccactcagatgagtagagcagtcagtttctctatgtgatctcccaccttgagtttctctccaatcatctagaaggtgcatagcacgctaaac 339  Q
    |||||||||| ||||| || |||| | || || || ||||||  |||||| ||||||  ||||||| | |||||||||| |||| | ||||||| | |||    
T  34905227 tgctagaaccgctcaggtgggtagcggagacaattactctattcgatctcacaccttttgtttctcgc-aatcatctaggaggttcttagcacgatcaac 34905129  T
Q  340 aacctgcagacttgtttcattttgctgttgccacaattttaagttc 385  Q
    |||||||  | | |||| |||||| || ||||| ||||||||||||    
T  34905128 aacctgcgaaatcgttttattttgttgctgccataattttaagttc 34905083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 111 - 241
Target Start/End: Complemental strand, 21515361 - 21515231
Alignment:
Q  111 aaattcattgtttttcattagctatcaactatctaatacatgatcatacattatcataaacgtgggagctagcatgagacgggattacatgtgttaattc 210  Q
    |||||||||||||||||||||||||||| ||||  || |||||   ||||| ||||||||||||||||||||||||||| |||  |||    | ||||||    
T  21515361 aaattcattgtttttcattagctatcaagtatcggatgcatgacggtacatcatcataaacgtgggagctagcatgagatggggctaccctagctaattc 21515262  T
Q  211 atgagcgatcctattaacttgcctcctattg 241  Q
    |||||||| || |||  ||||||||||||||    
T  21515261 atgagcgaccccattggcttgcctcctattg 21515231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 106 - 241
Target Start/End: Original strand, 11351545 - 11351680
Alignment:
Q  106 ggaagaaattcattgtttttcattagctatcaactatctaatacatgatcatacattatcataaacgtgggagctagcatgagacgggattacatgtgtt 205  Q
    |||| |||||||||| ||||||||||||||||| | || |||||||||   ||||| ||||||||||||| ||||||||||||| |||  |||    | |    
T  11351545 ggaaaaaattcattgcttttcattagctatcaagtctcgaatacatgacggtacatcatcataaacgtggaagctagcatgagatggggctaccctagct 11351644  T
Q  206 aattcatgagcgatcctattaacttgcctcctattg 241  Q
    ||||||||||||| || |||  ||||||||||||||    
T  11351645 aattcatgagcgaccccattggcttgcctcctattg 11351680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 189
Target Start/End: Complemental strand, 6784436 - 6784358
Alignment:
Q  111 aaattcattgtttttcattagctatcaactatctaatacatgatcatacattatcataaacgtgggagctagcatgaga 189  Q
    ||||||||||  |||||||||||||||| | ||  ||||||||   ||||||||||||||||||| |||||| ||||||    
T  6784436 aaattcattgcatttcattagctatcaagtctcggatacatgacggtacattatcataaacgtggaagctagtatgaga 6784358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 337 - 394
Target Start/End: Complemental strand, 20639147 - 20639090
Alignment:
Q  337 aacaacctgcagacttgtttcattttgctgttgccacaattttaagttcctatgcttc 394  Q
    |||||| || |||| |||||||||||| ||||||||||||||||| |||||| |||||    
T  20639147 aacaacttgtagacatgtttcattttgttgttgccacaattttaaattcctacgcttc 20639090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 381
Target Start/End: Original strand, 11352151 - 11352195
Alignment:
Q  337 aacaacctgcagacttgtttcattttgctgttgccacaattttaa 381  Q
    ||||||||| |||| |||||||||||| |||||||||||||||||    
T  11352151 aacaacctgtagacatgtttcattttgttgttgccacaattttaa 11352195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 187
Target Start/End: Original strand, 25396209 - 25396286
Alignment:
Q  110 gaaattcattgtttttcattagctatcaactatctaatacatgatcatacattatcataaacgtgggagctagcatga 187  Q
    |||||||||||||||||||||||||  |  | |||||||||||||  ||||| |   |||| ||||||||||||||||    
T  25396209 gaaattcattgtttttcattagctacaatgtgtctaatacatgatggtacatcagtgtaaatgtgggagctagcatga 25396286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 189
Target Start/End: Original strand, 32988848 - 32988917
Alignment:
Q  120 gtttttcattagctatcaactatctaatacatgatcatacattatcataaacgtgggagctagcatgaga 189  Q
    ||||||||||||||||||| | ||  ||||||||   ||||| |||||||||| || |||||||||||||    
T  32988848 gtttttcattagctatcaagtttcagatacatgacggtacatcatcataaacgcggaagctagcatgaga 32988917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 106 - 189
Target Start/End: Complemental strand, 24543376 - 24543293
Alignment:
Q  106 ggaagaaattcattgtttttcattagctatcaactatctaatacatgatcatacattatcataaacgtgggagctagcatgaga 189  Q
    |||| |||||||||||||||||||||||||||| | ||  ||||||||   ||||| |||||||||||||||||||||||||||    
T  24543376 ggaaaaaattcattgtttttcattagctatcaagtctcggatacatgacggtacatcatcataaacgtgggagctagcatgaga 24543293  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 114 - 241
Target Start/End: Original strand, 29894277 - 29894404
Alignment:
Q  114 ttcattgtttttcattagctatcaactatctaatacatgatcatacattatcataaacgtgggagctagcatgagacgggattacatgtgttaattcatg 213  Q
    ||||||| ||||||||||||||||| | || |||||||||   ||||| ||||||||||||||||||||||||||| |||  |||    | |||||||||    
T  29894277 ttcattgcttttcattagctatcaagtctcgaatacatgacggtacatcatcataaacgtgggagctagcatgagatggggctaccctagctaattcatg 29894376  T
Q  214 agcgatcctattaacttgcctcctattg 241  Q
    ||||| || |||  ||||||||||||||    
T  29894377 agcgaccccattggcttgcctcctattg 29894404  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 189
Target Start/End: Complemental strand, 36365198 - 36365120
Alignment:
Q  111 aaattcattgtttttcattagctatcaactatctaatacatgatcatacattatcataaacgtgggagctagcatgaga 189  Q
    |||||||||||||||||||| ||||||| | |   ||||||||   ||||| | |||||||||||||||||||||||||    
T  36365198 aaattcattgtttttcattaactatcaagtcttggatacatgacggtacatcaccataaacgtgggagctagcatgaga 36365120  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 108 - 230
Target Start/End: Original strand, 33722394 - 33722517
Alignment:
Q  108 aagaaattcattgtttttcattagctatcaactatctaatacatgatcatacattatcata--aacgtgggagctagcatgagacgggattacatgtgtt 205  Q
    ||||||||||||| |||| |||||||||||| | |  ||||||| |  ||| || ||||||  ||||||||||||||||||||| || ||||  | ||||    
T  33722394 aagaaattcattgctttttattagctatcaaatgttcaatacataactatatat-atcatataaacgtgggagctagcatgagatggaattatctatgtt 33722492  T
Q  206 aattcatgagcgatcctattaactt 230  Q
    |||| ||||||||||  ||||||||    
T  33722493 aatttatgagcgatctcattaactt 33722517  T

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Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 106 - 189
Target Start/End: Original strand, 43989206 - 43989289
Alignment:
Q  106 ggaagaaattcattgtttttcattagctatcaactatctaatacatgatcatacattatcataaacgtgggagctagcatgaga 189  Q
    |||| |||||||||| ||||||||||||||||| | ||  ||||||||   ||||| |||||||||||||||||||||||||||    
T  43989206 ggaaaaaattcattgcttttcattagctatcaagtctcggatacatgacggtacatcatcataaacgtgggagctagcatgaga 43989289  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 337 - 394
Target Start/End: Original strand, 43989811 - 43989868
Alignment:
Q  337 aacaacctgcagacttgtttcattttgctgttgccacaattttaagttcctatgcttc 394  Q
    ||||||||| |||| |||||||||||| ||||||||||||||||| |||||| |||||    
T  43989811 aacaacctgtagacatgtttcattttgttgttgccacaattttaaattcctacgcttc 43989868  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 241
Target Start/End: Original strand, 19315837 - 19315973
Alignment:
Q  105 gggaagaaattcattgtttttcattagctatcaactatctaatacatgatcatacattatcataaacgtgggagctagcatgagacgggattacatgtgt 204  Q
    ||||||||| |||||| |||| |||||||||||| | |  |||||||||   ||||| ||||||| ||||||||||| ||| ||  |||  ||| ||||     
T  19315837 gggaagaaagtcattgctttttattagctatcaaatgttcaatacatgacggtacataatcataagcgtgggagctaccataaggtggggctacctgtgc 19315936  T
Q  205 taattcatgagcgatcctattaacttgcctcctattg 241  Q
    |||||||||| |||  | |||  ||||||||||||||    
T  19315937 taattcatgaacgactccattggcttgcctcctattg 19315973  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 385
Target Start/End: Original strand, 19316378 - 19316488
Alignment:
Q  271 agtttctctatgtgatctcccaccttgagtttctctccaatcatctagaaggtgcatagcacgctaaacaacctgcagacttgtttcattttgctgttgc 370  Q
    |||| |||||| ||||||| ||||||| |   |||||||||||||||| |||| |||| |||| | |||||||| || | |  |||||||||| ||||||    
T  19316378 agttactctatttgatctcacaccttgcg---ctctccaatcatctaggaggttcataacacgatcaacaacctacaaa-tcatttcattttgttgttgc 19316473  T
Q  371 cacaattttaagttc 385  Q
    || ||||||||||||    
T  19316474 cataattttaagttc 19316488  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 159 - 241
Target Start/End: Complemental strand, 1394236 - 1394153
Alignment:
Q  159 cattatcataaacgtgggagctagcatgagacggg-attacatgtgttaattcatgagcgatcctattaacttgcctcctattg 241  Q
    |||||||||| | |||||||||||||| ||| ||| | ||| |||| |||||||||| ||| || |||| ||||||||||||||    
T  1394236 cattatcatagatgtgggagctagcattagatggggactacttgtgctaattcatgaacgaccccattagcttgcctcctattg 1394153  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 189
Target Start/End: Complemental strand, 18481388 - 18481313
Alignment:
Q  114 ttcattgtttttcattagctatcaactatctaatacatgatcatacattatcataaacgtgggagctagcatgaga 189  Q
    ||||||| ||||||||||||||||| | ||  ||||||||   ||||| |||||||||||||||||||||||||||    
T  18481388 ttcattgcttttcattagctatcaaatctcggatacatgacggtacatcatcataaacgtgggagctagcatgaga 18481313  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 108 - 154
Target Start/End: Original strand, 32535911 - 32535957
Alignment:
Q  108 aagaaattcattgtttttcattagctatcaactatctaatacatgat 154  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||    
T  32535911 aagaaaatcattgtttttcattagctatcaattatctaatacatgat 32535957  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 337 - 387
Target Start/End: Complemental strand, 18480790 - 18480740
Alignment:
Q  337 aacaacctgcagacttgtttcattttgctgttgccacaattttaagttcct 387  Q
    ||||||||| |||| |||||||||| | ||||||||||||||||| |||||    
T  18480790 aacaacctgtagacatgtttcatttcgttgttgccacaattttaaattcct 18480740  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 189
Target Start/End: Complemental strand, 942856 - 942773
Alignment:
Q  106 ggaagaaattcattgtttttcattagctatcaactatctaatacatgatcatacattatcataaacgtgggagctagcatgaga 189  Q
    |||| |||||||||||||||||||||||||||| | ||  ||||||||   ||||| ||| |||||||||||| ||||||||||    
T  942856 ggaaaaaattcattgtttttcattagctatcaagtttcggatacatgacggtacatcatcgtaaacgtgggagatagcatgaga 942773  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 304 - 394
Target Start/End: Original strand, 24809276 - 24809366
Alignment:
Q  304 tctccaatcatctagaaggtgcatagcacgctaaacaacctgcagacttgtttcattttgctgttgccacaattttaagttcctatgcttc 394  Q
    ||||||||||||||  |||||   ||| || | |||||| |||| || |||||||||||| |||||||||||||||||||||||| |||||    
T  24809276 tctccaatcatctaagaggtgtcgagcccgttcaacaacatgcatacatgtttcattttgttgttgccacaattttaagttcctacgcttc 24809366  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 173 - 240
Target Start/End: Original strand, 40901820 - 40901887
Alignment:
Q  173 tgggagctagcatgagacgggattacatgtgttaattcatgagcgatcctattaacttgcctcctatt 240  Q
    ||||||||||||||||| ||   ||| ||||||||||||||||||| | |||||  ||||||||||||    
T  40901820 tgggagctagcatgagatggagctacctgtgttaattcatgagcgaccatattagtttgcctcctatt 40901887  T

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Target: scaffold0042 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 394
Target Start/End: Complemental strand, 88874 - 88809
Alignment:
Q  329 gcacgctaaacaacctgcagacttgtttcattttgctgttgccacaattttaagttcctatgcttc 394  Q
    ||||||| ||||||||||  ||| || |||||||| ||||||||||||||||| |||||| |||||    
T  88874 gcacgctcaacaacctgcctactcgtctcattttgttgttgccacaattttaaattcctacgcttc 88809  T

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Target: scaffold0041 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 173 - 240
Target Start/End: Complemental strand, 48198 - 48131
Alignment:
Q  173 tgggagctagcatgagacgggattacatgtgttaattcatgagcgatcctattaacttgcctcctatt 240  Q
    ||||||||||||||||| ||   ||| ||||||||||||||||||| | |||||  ||||||||||||    
T  48198 tgggagctagcatgagatggagctacctgtgttaattcatgagcgaccatattagtttgcctcctatt 48131  T

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