View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20702_high_23 (Length: 256)

Name: NF20702_high_23
Description: NF20702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20702_high_23
NF20702_high_23
[»] chr7 (16 HSPs)
chr7 (34-252)||(48844754-48844972)
chr7 (2-35)||(2927182-2927215)
chr7 (2-35)||(16810924-16810957)
chr7 (1-36)||(5212153-5212188)
chr7 (1-35)||(2850972-2851006)
chr7 (1-35)||(10300817-10300851)
chr7 (1-35)||(10300931-10300965)
chr7 (2-36)||(48339078-48339112)
chr7 (7-35)||(1729393-1729421)
chr7 (3-35)||(24043191-24043223)
chr7 (4-36)||(25099649-25099681)
chr7 (1-37)||(25196566-25196602)
chr7 (7-35)||(28003174-28003202)
chr7 (4-36)||(35160862-35160894)
chr7 (7-35)||(37066298-37066326)
chr7 (7-35)||(46658848-46658876)
[»] chr6 (15 HSPs)
chr6 (34-249)||(7017871-7018088)
chr6 (1-35)||(22341958-22341992)
chr6 (1-37)||(383601-383637)
chr6 (1-37)||(32710066-32710102)
chr6 (7-38)||(14804279-14804310)
chr6 (1-35)||(24914336-24914370)
chr6 (1-35)||(26597275-26597309)
chr6 (2-35)||(12291056-12291089)
chr6 (1-38)||(12349808-12349845)
chr6 (4-37)||(32364129-32364162)
chr6 (4-37)||(32710185-32710218)
chr6 (4-36)||(667723-667755)
chr6 (1-37)||(2157667-2157703)
chr6 (2-38)||(10118729-10118765)
chr6 (1-37)||(34246237-34246273)
[»] chr5 (20 HSPs)
chr5 (1-38)||(14550142-14550179)
chr5 (1-42)||(6168668-6168709)
chr5 (1-37)||(5226013-5226049)
chr5 (1-37)||(36337844-36337880)
chr5 (4-36)||(39148571-39148603)
chr5 (1-36)||(16067183-16067218)
chr5 (4-35)||(21369386-21369417)
chr5 (1-36)||(22635423-22635458)
chr5 (1-35)||(8618393-8618427)
chr5 (1-35)||(14274244-14274278)
chr5 (1-35)||(36917163-36917197)
chr5 (4-37)||(4162916-4162949)
chr5 (1-38)||(18003850-18003887)
chr5 (6-35)||(20914740-20914769)
chr5 (2-35)||(34399561-34399594)
chr5 (6-38)||(504112-504144)
chr5 (1-37)||(4162797-4162833)
chr5 (7-35)||(35245724-35245752)
chr5 (4-36)||(37039805-37039837)
chr5 (7-35)||(38283379-38283407)
[»] chr3 (23 HSPs)
chr3 (1-38)||(378708-378745)
chr3 (1-38)||(378798-378835)
chr3 (1-37)||(48909144-48909180)
chr3 (1-36)||(20547788-20547823)
chr3 (1-36)||(35455558-35455593)
chr3 (1-36)||(48895626-48895661)
chr3 (1-35)||(48895496-48895530)
chr3 (2-35)||(39333286-39333319)
chr3 (1-36)||(1126510-1126545)
chr3 (4-43)||(39333403-39333442)
chr3 (1-35)||(33639024-33639058)
chr3 (1-35)||(42957830-42957864)
chr3 (4-38)||(46843694-46843728)
chr3 (1-35)||(48908656-48908690)
chr3 (7-36)||(12569218-12569247)
chr3 (7-36)||(13545682-13545711)
chr3 (1-38)||(13927388-13927425)
chr3 (1-38)||(20547868-20547905)
chr3 (2-35)||(42957945-42957978)
chr3 (3-35)||(11582745-11582777)
chr3 (4-36)||(17940183-17940215)
chr3 (7-39)||(32589439-32589471)
chr3 (4-36)||(39148802-39148834)
[»] chr1 (31 HSPs)
chr1 (1-36)||(43147545-43147580)
chr1 (1-35)||(12568432-12568466)
chr1 (1-35)||(31919836-31919870)
chr1 (1-38)||(22954882-22954919)
chr1 (2-35)||(38149475-38149508)
chr1 (1-37)||(435316-435352)
chr1 (4-36)||(1344481-1344513)
chr1 (1-36)||(15998321-15998356)
chr1 (7-38)||(25378373-25378404)
chr1 (1-36)||(34662400-34662435)
chr1 (1-36)||(41649526-41649561)
chr1 (1-36)||(42468953-42468988)
chr1 (1-35)||(11994856-11994890)
chr1 (6-36)||(18913596-18913626)
chr1 (1-35)||(30785556-30785590)
chr1 (1-35)||(31414866-31414900)
chr1 (1-35)||(39151720-39151754)
chr1 (1-35)||(42468851-42468885)
chr1 (4-41)||(6669499-6669536)
chr1 (4-37)||(16427021-16427054)
chr1 (2-35)||(24286876-24286909)
chr1 (2-35)||(31327563-31327596)
chr1 (2-35)||(35838714-35838747)
chr1 (4-37)||(42761346-42761379)
chr1 (4-36)||(13911281-13911313)
chr1 (4-36)||(24023478-24023510)
chr1 (4-36)||(26040493-26040525)
chr1 (4-36)||(34121031-34121063)
chr1 (1-37)||(42761227-42761263)
chr1 (7-35)||(49363500-49363528)
chr1 (4-36)||(49980612-49980644)
[»] chr4 (22 HSPs)
chr4 (1-43)||(2994709-2994751)
chr4 (1-35)||(9011855-9011889)
chr4 (7-38)||(51975240-51975271)
chr4 (1-36)||(54927215-54927250)
chr4 (4-38)||(7695242-7695276)
chr4 (1-35)||(31808318-31808352)
chr4 (1-35)||(45861001-45861035)
chr4 (1-35)||(45861115-45861149)
chr4 (1-35)||(47628391-47628425)
chr4 (1-35)||(54677346-54677380)
chr4 (2-35)||(2994832-2994865)
chr4 (4-41)||(31808435-31808472)
chr4 (1-38)||(36235671-36235708)
chr4 (2-35)||(48796172-48796205)
chr4 (2-35)||(48796286-48796319)
chr4 (7-36)||(51126100-51126129)
chr4 (7-36)||(52256858-52256887)
chr4 (2-38)||(26651572-26651608)
chr4 (4-36)||(35207434-35207466)
chr4 (4-36)||(45070830-45070862)
chr4 (7-35)||(48079632-48079660)
chr4 (2-38)||(51545497-51545533)
[»] chr2 (16 HSPs)
chr2 (1-35)||(21209002-21209036)
chr2 (1-35)||(38962437-38962471)
chr2 (1-38)||(21208885-21208922)
chr2 (1-37)||(6048072-6048108)
chr2 (1-36)||(7354765-7354800)
chr2 (1-32)||(19908504-19908535)
chr2 (1-36)||(27692597-27692632)
chr2 (1-36)||(33618307-33618342)
chr2 (2-36)||(7728428-7728462)
chr2 (1-35)||(18649617-18649651)
chr2 (4-38)||(29573807-29573841)
chr2 (1-35)||(40846574-40846608)
chr2 (2-36)||(42792765-42792799)
chr2 (7-36)||(26567752-26567781)
chr2 (4-36)||(14152185-14152217)
chr2 (2-34)||(42263012-42263044)
[»] chr8 (17 HSPs)
chr8 (1-38)||(45145595-45145632)
chr8 (6-46)||(9203499-9203539)
chr8 (1-36)||(4786697-4786732)
chr8 (1-32)||(18126054-18126085)
chr8 (1-36)||(19163429-19163464)
chr8 (1-36)||(38815913-38815948)
chr8 (1-35)||(5526607-5526641)
chr8 (1-35)||(30245614-30245648)
chr8 (2-36)||(33472980-33473014)
chr8 (1-35)||(38815799-38815833)
chr8 (1-38)||(5526488-5526525)
chr8 (1-34)||(33570618-33570651)
chr8 (1-37)||(8769635-8769671)
chr8 (1-37)||(40305006-40305042)
chr8 (4-36)||(40739604-40739636)
chr8 (3-35)||(42666229-42666261)
chr8 (4-36)||(43844719-43844751)
[»] scaffold0633 (1 HSPs)
scaffold0633 (1-36)||(5435-5470)
[»] scaffold0036 (2 HSPs)
scaffold0036 (1-35)||(36406-36440)
scaffold0036 (1-35)||(36520-36554)
[»] scaffold0321 (1 HSPs)
scaffold0321 (4-36)||(1628-1660)
[»] scaffold0002 (1 HSPs)
scaffold0002 (2-34)||(491847-491879)


Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 34 - 252
Target Start/End: Complemental strand, 48844972 - 48844754
Alignment:
Q  34 tatatctttaacttgatgtaaaatagaagtgtttatttcatttgttatttttattgttctttttagttctcacaagcttgaagaataggctttggtaaag 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48844972 tatatctttaacttgatgtaaaatagaagtgtttatttcatttgttatttttattgttctttttagttctcacaagcttgaagaataggctttggtaaag 48844873  T
Q  134 aaaggtcgttatgattggaacaaatttaaagaaacaaaaatcatatttatattatgagacccgatcataggtataatgtgttagttgtagattggatcaa 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  48844872 aaaggtcgttatgattggaacaaatttaaagaaacaaaaatcatatttatattatgagacccgatcatagatatcatgtgttagttgtagattggatcaa 48844773  T
Q  234 tctttataatgaagaataa 252  Q
    |||||||||||||||||||    
T  48844772 tctttataatgaagaataa 48844754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 2927215 - 2927182
Alignment:
Q  2 tgaattttgcttatattttaaaacggagggagta 35  Q
    ||||||||||||||||||||||||||||||||||    
T  2927215 tgaattttgcttatattttaaaacggagggagta 2927182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 16810924 - 16810957
Alignment:
Q  2 tgaattttgcttatattttaaaacggagggagta 35  Q
    ||||||||||||||||||||||||||||||||||    
T  16810924 tgaattttgcttatattttaaaacggagggagta 16810957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 5212153 - 5212188
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagtat 36  Q
    ||||||||| ||||||||||||||||||||||||||    
T  5212153 gtgaattttacttatattttaaaacggagggagtat 5212188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 2851006 - 2850972
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagta 35  Q
    |||||||||||||||||||| ||||||||||||||    
T  2851006 gtgaattttgcttatattttgaaacggagggagta 2850972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 10300851 - 10300817
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  10300851 gtgaattttgcttatattttaaaatggagggagta 10300817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 10300931 - 10300965
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagta 35  Q
    |||||||||||||||||||| ||||||||||||||    
T  10300931 gtgaattttgcttatattttgaaacggagggagta 10300965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 48339078 - 48339112
Alignment:
Q  2 tgaattttgcttatattttaaaacggagggagtat 36  Q
    ||||||||||||||||||||||||||| |||||||    
T  48339078 tgaattttgcttatattttaaaacggatggagtat 48339112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 35
Target Start/End: Complemental strand, 1729421 - 1729393
Alignment:
Q  7 tttgcttatattttaaaacggagggagta 35  Q
    |||||||||||||||||||||||||||||    
T  1729421 tttgcttatattttaaaacggagggagta 1729393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 24043191 - 24043223
Alignment:
Q  3 gaattttgcttatattttaaaacggagggagta 35  Q
    ||||||||||||||||||||||||||| |||||    
T  24043191 gaattttgcttatattttaaaacggagagagta 24043223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 25099649 - 25099681
Alignment:
Q  4 aattttgcttatattttaaaacggagggagtat 36  Q
    |||||||||||||||| ||||||||||||||||    
T  25099649 aattttgcttatatttaaaaacggagggagtat 25099681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 25196602 - 25196566
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagtata 37  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  25196602 gtgaattttgcttatattttgaaacggaggaagtata 25196566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 35
Target Start/End: Complemental strand, 28003202 - 28003174
Alignment:
Q  7 tttgcttatattttaaaacggagggagta 35  Q
    |||||||||||||||||||||||||||||    
T  28003202 tttgcttatattttaaaacggagggagta 28003174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 35160862 - 35160894
Alignment:
Q  4 aattttgcttatattttaaaacggagggagtat 36  Q
    |||||||||||||||| ||||||||||||||||    
T  35160862 aattttgcttatatttaaaaacggagggagtat 35160894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 35
Target Start/End: Original strand, 37066298 - 37066326
Alignment:
Q  7 tttgcttatattttaaaacggagggagta 35  Q
    |||||||||||||||||||||||||||||    
T  37066298 tttgcttatattttaaaacggagggagta 37066326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 35
Target Start/End: Original strand, 46658848 - 46658876
Alignment:
Q  7 tttgcttatattttaaaacggagggagta 35  Q
    |||||||||||||||||||||||||||||    
T  46658848 tttgcttatattttaaaacggagggagta 46658876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 34 - 249
Target Start/End: Original strand, 7017871 - 7018088
Alignment:
Q  34 tatatctttaacttgatgtaaaatagaagtgtttatttcatttgttatttttattgttctttttagttctcacaagcttgaagaataggctttggtaaag 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7017871 tatatctttaacttgatgtaaaatagaagtgtttatttcatttgttatttttgttgttctttttagttctcacaagcttgaagaataggctttggtaaag 7017970  T
Q  134 aaaggtcgttatgattggaacaaatttaaagaaacaaaaatcatatttatattat--gagacccgatcataggtataatgtgttagttgtagattggatc 231  Q
    ||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||| |||||||||||||||||||||||    
T  7017971 aaaggtcattacgattgaaacaaatttaaagaaacaaaaatcatatttatattatgagagacccgatcatagatatcatgtgttagttgtagattggatc 7018070  T
Q  232 aatctttataatgaagaa 249  Q
    ||||||| ||||||||||    
T  7018071 aatctttctaatgaagaa 7018088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 22341992 - 22341958
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagta 35  Q
    |||||||||||||||||||||||||||||||||||    
T  22341992 gtgaattttgcttatattttaaaacggagggagta 22341958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 383637 - 383601
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagtata 37  Q
    |||||||||||||||||||| ||||||||||||||||    
T  383637 gtgaattttgcttatattttgaaacggagggagtata 383601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 32710102 - 32710066
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagtata 37  Q
    ||||||||| |||||||||||||||||||||||||||    
T  32710102 gtgaattttacttatattttaaaacggagggagtata 32710066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 38
Target Start/End: Original strand, 14804279 - 14804310
Alignment:
Q  7 tttgcttatattttaaaacggagggagtatat 38  Q
    ||||||||||||||||||||||||||||||||    
T  14804279 tttgcttatattttaaaacggagggagtatat 14804310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 24914370 - 24914336
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagta 35  Q
    |||||||||||||||||||| ||||||||||||||    
T  24914370 gtgaattttgcttatattttgaaacggagggagta 24914336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 26597275 - 26597309
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagta 35  Q
    |||||||||||||||||||| ||||||||||||||    
T  26597275 gtgaattttgcttatattttgaaacggagggagta 26597309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 12291056 - 12291089
Alignment:
Q  2 tgaattttgcttatattttaaaacggagggagta 35  Q
    ||||||||||||||||||| ||||||||||||||    
T  12291056 tgaattttgcttatattttgaaacggagggagta 12291089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 12349845 - 12349808
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagtatat 38  Q
    |||||||||||||||||||| ||||||| |||||||||    
T  12349845 gtgaattttgcttatattttgaaacggatggagtatat 12349808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 32364129 - 32364162
Alignment:
Q  4 aattttgcttatattttaaaacggagggagtata 37  Q
    |||||||||||||||| |||||||||||||||||    
T  32364129 aattttgcttatatttaaaaacggagggagtata 32364162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 32710185 - 32710218
Alignment:
Q  4 aattttgcttatattttaaaacggagggagtata 37  Q
    ||||||||||| ||||||||||||||||||||||    
T  32710185 aattttgcttacattttaaaacggagggagtata 32710218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 667755 - 667723
Alignment:
Q  4 aattttgcttatattttaaaacggagggagtat 36  Q
    |||||||||||||||| ||||||||||||||||    
T  667755 aattttgcttatatttaaaaacggagggagtat 667723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 2157667 - 2157703
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagtata 37  Q
    |||||||||||||||||||| ||||||| ||||||||    
T  2157667 gtgaattttgcttatattttgaaacggatggagtata 2157703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 10118729 - 10118765
Alignment:
Q  2 tgaattttgcttatattttaaaacggagggagtatat 38  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  10118729 tgaattttgcttatattttgaaacggagggattatat 10118765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 34246237 - 34246273
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagtata 37  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  34246237 gtgaattttacttatattttgaaacggagggagtata 34246273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 14550142 - 14550179
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagtatat 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  14550142 gtgaattttgcttatattttaaaacggagggagtatat 14550179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 6168709 - 6168668
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagtatatcttt 42  Q
    |||||||||||||||||||| ||||||||||||||| |||||    
T  6168709 gtgaattttgcttatattttgaaacggagggagtatttcttt 6168668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 5226049 - 5226013
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagtata 37  Q
    |||||||||||||||||||| ||||||||||||||||    
T  5226049 gtgaattttgcttatattttgaaacggagggagtata 5226013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 36337844 - 36337880
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagtata 37  Q
    ||||||||||||||||||| |||||||||||||||||    
T  36337844 gtgaattttgcttatatttaaaaacggagggagtata 36337880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 39148571 - 39148603
Alignment:
Q  4 aattttgcttatattttaaaacggagggagtat 36  Q
    |||||||||||||||||||||||||||||||||    
T  39148571 aattttgcttatattttaaaacggagggagtat 39148603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 16067183 - 16067218
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagtat 36  Q
    |||||||||||||||||||| |||||||||||||||    
T  16067183 gtgaattttgcttatattttgaaacggagggagtat 16067218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 35
Target Start/End: Original strand, 21369386 - 21369417
Alignment:
Q  4 aattttgcttatattttaaaacggagggagta 35  Q
    ||||||||||||||||||||||||||||||||    
T  21369386 aattttgcttatattttaaaacggagggagta 21369417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 22635423 - 22635458
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagtat 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  22635423 gtgaaatttgcttatattttaaaacggagggagtat 22635458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 8618427 - 8618393
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagta 35  Q
    |||||||||||||||||||| ||||||||||||||    
T  8618427 gtgaattttgcttatattttgaaacggagggagta 8618393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 14274244 - 14274278
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagta 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  14274244 gtgaattttgcttatattttaaaacggagagagta 14274278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 36917197 - 36917163
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagta 35  Q
    |||||||||||||||| ||||||||||||||||||    
T  36917197 gtgaattttgcttatactttaaaacggagggagta 36917163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 4162916 - 4162949
Alignment:
Q  4 aattttgcttatattttaaaacggagggagtata 37  Q
    ||||||||||||||||||||||||| ||||||||    
T  4162916 aattttgcttatattttaaaacggaaggagtata 4162949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 18003887 - 18003850
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagtatat 38  Q
    |||||||||||||||||||| ||||||| |||||||||    
T  18003887 gtgaattttgcttatattttgaaacggatggagtatat 18003850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 20914769 - 20914740
Alignment:
Q  6 ttttgcttatattttaaaacggagggagta 35  Q
    ||||||||||||||||||||||||||||||    
T  20914769 ttttgcttatattttaaaacggagggagta 20914740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 34399594 - 34399561
Alignment:
Q  2 tgaattttgcttatattttaaaacggagggagta 35  Q
    ||||||||||||||||||||||||||||| ||||    
T  34399594 tgaattttgcttatattttaaaacggaggaagta 34399561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 504144 - 504112
Alignment:
Q  6 ttttgcttatattttaaaacggagggagtatat 38  Q
    ||||||||||||||||||||||| |||||||||    
T  504144 ttttgcttatattttaaaacggaaggagtatat 504112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 4162833 - 4162797
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagtata 37  Q
    |||||||||||||||||||| ||||||| ||||||||    
T  4162833 gtgaattttgcttatattttgaaacggaaggagtata 4162797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 35
Target Start/End: Original strand, 35245724 - 35245752
Alignment:
Q  7 tttgcttatattttaaaacggagggagta 35  Q
    |||||||||||||||||||||||||||||    
T  35245724 tttgcttatattttaaaacggagggagta 35245752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 37039805 - 37039837
Alignment:
Q  4 aattttgcttatattttaaaacggagggagtat 36  Q
    |||||||||||||||| ||||||||||||||||    
T  37039805 aattttgcttatatttaaaaacggagggagtat 37039837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 35
Target Start/End: Complemental strand, 38283407 - 38283379
Alignment:
Q  7 tttgcttatattttaaaacggagggagta 35  Q
    |||||||||||||||||||||||||||||    
T  38283407 tttgcttatattttaaaacggagggagta 38283379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 378745 - 378708
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagtatat 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  378745 gtgaattttgcttatattttaaaacggagggagtatat 378708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 378798 - 378835
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagtatat 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  378798 gtgaattttgcttatattttaaaacggagggagtatat 378835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 48909144 - 48909180
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagtata 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  48909144 gtgaattttgcttatattttaaaacggagggagtata 48909180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 20547823 - 20547788
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagtat 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  20547823 gtgaattttgcttatattttaaaacggagggagtat 20547788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 35455593 - 35455558
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagtat 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  35455593 gtgaattttgcttatattttaaaacggagggagtat 35455558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 48895626 - 48895661
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagtat 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  48895626 gtgaattttgcttatattttaaaacggagggagtat 48895661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 48895530 - 48895496
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagta 35  Q
    |||||||||||||||||||||||||||||||||||    
T  48895530 gtgaattttgcttatattttaaaacggagggagta 48895496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 39333319 - 39333286
Alignment:
Q  2 tgaattttgcttatattttaaaacggagggagta 35  Q
    ||||||||||||||||||||||||||||||||||    
T  39333319 tgaattttgcttatattttaaaacggagggagta 39333286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 1126510 - 1126545
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagtat 36  Q
    |||||| |||||||||||||||||||||||||||||    
T  1126510 gtgaatcttgcttatattttaaaacggagggagtat 1126545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 39333403 - 39333442
Alignment:
Q  4 aattttgcttatattttaaaacggagggagtatatcttta 43  Q
    ||||||||||||||||| |||||||||||||| |||||||    
T  39333403 aattttgcttatattttgaaacggagggagtacatcttta 39333442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 33639024 - 33639058
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagta 35  Q
    ||||||||||||||||||| |||||||||||||||    
T  33639024 gtgaattttgcttatatttaaaaacggagggagta 33639058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 42957864 - 42957830
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagta 35  Q
    |||||||||||||||||||||||||||| ||||||    
T  42957864 gtgaattttgcttatattttaaaacggatggagta 42957830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 38
Target Start/End: Original strand, 46843694 - 46843728
Alignment:
Q  4 aattttgcttatattttaaaacggagggagtatat 38  Q
    |||||||||||||||| ||||||||||||||||||    
T  46843694 aattttgcttatatttaaaaacggagggagtatat 46843728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 48908690 - 48908656
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagta 35  Q
    |||||||||||||||||||| ||||||||||||||    
T  48908690 gtgaattttgcttatattttgaaacggagggagta 48908656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 36
Target Start/End: Original strand, 12569218 - 12569247
Alignment:
Q  7 tttgcttatattttaaaacggagggagtat 36  Q
    ||||||||||||||||||||||||||||||    
T  12569218 tttgcttatattttaaaacggagggagtat 12569247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 36
Target Start/End: Original strand, 13545682 - 13545711
Alignment:
Q  7 tttgcttatattttaaaacggagggagtat 36  Q
    ||||||||||||||||||||||||||||||    
T  13545682 tttgcttatattttaaaacggagggagtat 13545711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 13927425 - 13927388
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagtatat 38  Q
    |||||||| ||||||||||| |||||||||||||||||    
T  13927425 gtgaatttcgcttatattttgaaacggagggagtatat 13927388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 20547868 - 20547905
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagtatat 38  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  20547868 gtgaattttgcttatattttgaaacggagagagtatat 20547905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 42957945 - 42957978
Alignment:
Q  2 tgaattttgcttatattttaaaacggagggagta 35  Q
    ||||||||||||||||||| ||||||||||||||    
T  42957945 tgaattttgcttatattttgaaacggagggagta 42957978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 11582777 - 11582745
Alignment:
Q  3 gaattttgcttatattttaaaacggagggagta 35  Q
    |||||||||||||||||| ||||||||||||||    
T  11582777 gaattttgcttatattttgaaacggagggagta 11582745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 17940215 - 17940183
Alignment:
Q  4 aattttgcttatattttaaaacggagggagtat 36  Q
    |||||||||||||||| ||||||||||||||||    
T  17940215 aattttgcttatatttaaaaacggagggagtat 17940183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 32589439 - 32589471
Alignment:
Q  7 tttgcttatattttaaaacggagggagtatatc 39  Q
    ||||||||||||||| |||||||||||||||||    
T  32589439 tttgcttatattttagaacggagggagtatatc 32589471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 39148802 - 39148834
Alignment:
Q  4 aattttgcttatattttaaaacggagggagtat 36  Q
    ||||||||||||||||| |||||||||||||||    
T  39148802 aattttgcttatattttgaaacggagggagtat 39148834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 43147545 - 43147580
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagtat 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  43147545 gtgaattttgcttatattttaaaacggagggagtat 43147580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 12568466 - 12568432
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagta 35  Q
    |||||||||||||||||||||||||||||||||||    
T  12568466 gtgaattttgcttatattttaaaacggagggagta 12568432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 31919870 - 31919836
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagta 35  Q
    |||||||||||||||||||||||||||||||||||    
T  31919870 gtgaattttgcttatattttaaaacggagggagta 31919836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 22954882 - 22954919
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagtatat 38  Q
    |||||||||||||||||||||| |||||||||||||||    
T  22954882 gtgaattttgcttatattttaacacggagggagtatat 22954919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 38149475 - 38149508
Alignment:
Q  2 tgaattttgcttatattttaaaacggagggagta 35  Q
    ||||||||||||||||||||||||||||||||||    
T  38149475 tgaattttgcttatattttaaaacggagggagta 38149508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 435316 - 435352
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagtata 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  435316 gtgaattttgcttatattttaaaacggagtgagtata 435352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 1344481 - 1344513
Alignment:
Q  4 aattttgcttatattttaaaacggagggagtat 36  Q
    |||||||||||||||||||||||||||||||||    
T  1344481 aattttgcttatattttaaaacggagggagtat 1344513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 15998321 - 15998356
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagtat 36  Q
    |||||||||||||||||||| |||||||||||||||    
T  15998321 gtgaattttgcttatattttgaaacggagggagtat 15998356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 38
Target Start/End: Original strand, 25378373 - 25378404
Alignment:
Q  7 tttgcttatattttaaaacggagggagtatat 38  Q
    ||||||||||||||||||||||||||||||||    
T  25378373 tttgcttatattttaaaacggagggagtatat 25378404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 34662435 - 34662400
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagtat 36  Q
    |||||||||||||||||||| |||||||||||||||    
T  34662435 gtgaattttgcttatattttgaaacggagggagtat 34662400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 41649561 - 41649526
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagtat 36  Q
    |||||||||||||||||||| |||||||||||||||    
T  41649561 gtgaattttgcttatattttgaaacggagggagtat 41649526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 42468953 - 42468988
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagtat 36  Q
    |||||||||||||||||||||||||||| |||||||    
T  42468953 gtgaattttgcttatattttaaaacggaaggagtat 42468988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 11994890 - 11994856
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagta 35  Q
    |||||||||||||||||||| ||||||||||||||    
T  11994890 gtgaattttgcttatattttgaaacggagggagta 11994856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 36
Target Start/End: Original strand, 18913596 - 18913626
Alignment:
Q  6 ttttgcttatattttaaaacggagggagtat 36  Q
    |||||||||||||||||||||||||||||||    
T  18913596 ttttgcttatattttaaaacggagggagtat 18913626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 30785590 - 30785556
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagta 35  Q
    ||||||||||||||||| |||||||||||||||||    
T  30785590 gtgaattttgcttatatgttaaaacggagggagta 30785556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 31414866 - 31414900
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagta 35  Q
    |||||||||||||||||||| ||||||||||||||    
T  31414866 gtgaattttgcttatattttgaaacggagggagta 31414900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 39151754 - 39151720
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagta 35  Q
    |||||||||||||||||||| ||||||||||||||    
T  39151754 gtgaattttgcttatattttgaaacggagggagta 39151720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 42468885 - 42468851
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagta 35  Q
    |||||||||||||||||||||||||||| ||||||    
T  42468885 gtgaattttgcttatattttaaaacggaaggagta 42468851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 6669536 - 6669499
Alignment:
Q  4 aattttgcttatattttaaaacggagggagtatatctt 41  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  6669536 aattttgcttatattttgaaacggagggagtacatctt 6669499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 16427021 - 16427054
Alignment:
Q  4 aattttgcttatattttaaaacggagggagtata 37  Q
    |||||||||||||||| |||||||||||||||||    
T  16427021 aattttgcttatatttaaaaacggagggagtata 16427054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 24286876 - 24286909
Alignment:
Q  2 tgaattttgcttatattttaaaacggagggagta 35  Q
    ||||||||||||||||||| ||||||||||||||    
T  24286876 tgaattttgcttatattttgaaacggagggagta 24286909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 31327596 - 31327563
Alignment:
Q  2 tgaattttgcttatattttaaaacggagggagta 35  Q
    ||||||||||||||||||||||||||||| ||||    
T  31327596 tgaattttgcttatattttaaaacggaggaagta 31327563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 35838747 - 35838714
Alignment:
Q  2 tgaattttgcttatattttaaaacggagggagta 35  Q
    ||||||||||||||||||| ||||||||||||||    
T  35838747 tgaattttgcttatattttgaaacggagggagta 35838714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 42761346 - 42761379
Alignment:
Q  4 aattttgcttatattttaaaacggagggagtata 37  Q
    |||||| |||||||||||||||||||||||||||    
T  42761346 aattttacttatattttaaaacggagggagtata 42761379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 13911313 - 13911281
Alignment:
Q  4 aattttgcttatattttaaaacggagggagtat 36  Q
    |||||| ||||||||||||||||||||||||||    
T  13911313 aattttacttatattttaaaacggagggagtat 13911281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 24023478 - 24023510
Alignment:
Q  4 aattttgcttatattttaaaacggagggagtat 36  Q
    |||||||||||||||| ||||||||||||||||    
T  24023478 aattttgcttatatttaaaaacggagggagtat 24023510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 26040493 - 26040525
Alignment:
Q  4 aattttgcttatattttaaaacggagggagtat 36  Q
    ||||||||||||||||| |||||||||||||||    
T  26040493 aattttgcttatattttgaaacggagggagtat 26040525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 34121031 - 34121063
Alignment:
Q  4 aattttgcttatattttaaaacggagggagtat 36  Q
    ||||||||||||||||||||||||| |||||||    
T  34121031 aattttgcttatattttaaaacggatggagtat 34121063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 42761263 - 42761227
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagtata 37  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  42761263 gtgaattttgcttatattttgaaacgtagggagtata 42761227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 35
Target Start/End: Original strand, 49363500 - 49363528
Alignment:
Q  7 tttgcttatattttaaaacggagggagta 35  Q
    |||||||||||||||||||||||||||||    
T  49363500 tttgcttatattttaaaacggagggagta 49363528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 49980644 - 49980612
Alignment:
Q  4 aattttgcttatattttaaaacggagggagtat 36  Q
    ||||||||||||||||| |||||||||||||||    
T  49980644 aattttgcttatattttgaaacggagggagtat 49980612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 2994751 - 2994709
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagtatatcttta 43  Q
    |||||||||||||||||||| ||||||||||||||| ||||||    
T  2994751 gtgaattttgcttatattttgaaacggagggagtatgtcttta 2994709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 9011855 - 9011889
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagta 35  Q
    |||||||||||||||||||||||||||||||||||    
T  9011855 gtgaattttgcttatattttaaaacggagggagta 9011889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 38
Target Start/End: Original strand, 51975240 - 51975271
Alignment:
Q  7 tttgcttatattttaaaacggagggagtatat 38  Q
    ||||||||||||||||||||||||||||||||    
T  51975240 tttgcttatattttaaaacggagggagtatat 51975271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 54927215 - 54927250
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagtat 36  Q
    |||||||||||||||||||| |||||||||||||||    
T  54927215 gtgaattttgcttatattttgaaacggagggagtat 54927250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 38
Target Start/End: Original strand, 7695242 - 7695276
Alignment:
Q  4 aattttgcttatattttaaaacggagggagtatat 38  Q
    ||||||||||||||||| |||||||||||||||||    
T  7695242 aattttgcttatattttgaaacggagggagtatat 7695276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 31808352 - 31808318
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagta 35  Q
    |||||||||||||||||||||||||||| ||||||    
T  31808352 gtgaattttgcttatattttaaaacggatggagta 31808318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 45861035 - 45861001
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagta 35  Q
    |||||||||||||||||||| ||||||||||||||    
T  45861035 gtgaattttgcttatattttgaaacggagggagta 45861001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 45861115 - 45861149
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagta 35  Q
    |||||||||||||||||||| ||||||||||||||    
T  45861115 gtgaattttgcttatattttgaaacggagggagta 45861149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 47628391 - 47628425
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagta 35  Q
    |||||||||||||||||||| ||||||||||||||    
T  47628391 gtgaattttgcttatattttgaaacggagggagta 47628425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 54677380 - 54677346
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagta 35  Q
    |||||||||||||||||||| ||||||||||||||    
T  54677380 gtgaattttgcttatattttgaaacggagggagta 54677346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 2994832 - 2994865
Alignment:
Q  2 tgaattttgcttatattttaaaacggagggagta 35  Q
    ||||||||||||||||||| ||||||||||||||    
T  2994832 tgaattttgcttatattttgaaacggagggagta 2994865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 31808435 - 31808472
Alignment:
Q  4 aattttgcttatattttaaaacggagggagtatatctt 41  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  31808435 aattttgcttatattttaaaacggatggagtatgtctt 31808472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 36235708 - 36235671
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagtatat 38  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  36235708 gtgaattttgcttatattttgaaatggagggagtatat 36235671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 48796205 - 48796172
Alignment:
Q  2 tgaattttgcttatattttaaaacggagggagta 35  Q
    ||||||||||||||||||||||||||| ||||||    
T  48796205 tgaattttgcttatattttaaaacggatggagta 48796172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 48796286 - 48796319
Alignment:
Q  2 tgaattttgcttatattttaaaacggagggagta 35  Q
    ||||||||||||||||||| ||||||||||||||    
T  48796286 tgaattttgcttatattttgaaacggagggagta 48796319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 36
Target Start/End: Complemental strand, 51126129 - 51126100
Alignment:
Q  7 tttgcttatattttaaaacggagggagtat 36  Q
    ||||||||||||||||||||||||||||||    
T  51126129 tttgcttatattttaaaacggagggagtat 51126100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 36
Target Start/End: Original strand, 52256858 - 52256887
Alignment:
Q  7 tttgcttatattttaaaacggagggagtat 36  Q
    ||||||||||||||||||||||||||||||    
T  52256858 tttgcttatattttaaaacggagggagtat 52256887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 26651572 - 26651608
Alignment:
Q  2 tgaattttgcttatattttaaaacggagggagtatat 38  Q
    ||||||||||||||||||| | |||||||||||||||    
T  26651572 tgaattttgcttatattttgacacggagggagtatat 26651608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 35207466 - 35207434
Alignment:
Q  4 aattttgcttatattttaaaacggagggagtat 36  Q
    ||||||||||||||||| |||||||||||||||    
T  35207466 aattttgcttatattttgaaacggagggagtat 35207434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 45070862 - 45070830
Alignment:
Q  4 aattttgcttatattttaaaacggagggagtat 36  Q
    ||||||||||||||||| |||||||||||||||    
T  45070862 aattttgcttatattttgaaacggagggagtat 45070830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 35
Target Start/End: Original strand, 48079632 - 48079660
Alignment:
Q  7 tttgcttatattttaaaacggagggagta 35  Q
    |||||||||||||||||||||||||||||    
T  48079632 tttgcttatattttaaaacggagggagta 48079660  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 51545497 - 51545533
Alignment:
Q  2 tgaattttgcttatattttaaaacggagggagtatat 38  Q
    |||||||||||||||||||  ||||||||||||||||    
T  51545497 tgaattttgcttatattttggaacggagggagtatat 51545533  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 21209002 - 21209036
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagta 35  Q
    |||||||||||||||||||||||||||||||||||    
T  21209002 gtgaattttgcttatattttaaaacggagggagta 21209036  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 38962471 - 38962437
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagta 35  Q
    |||||||||||||||||||||||||||||||||||    
T  38962471 gtgaattttgcttatattttaaaacggagggagta 38962437  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 21208922 - 21208885
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagtatat 38  Q
    |||||||||||||||||||| |||||||||||||||||    
T  21208922 gtgaattttgcttatattttgaaacggagggagtatat 21208885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 6048072 - 6048108
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagtata 37  Q
    |||||||||||||||||||| ||||||||||||||||    
T  6048072 gtgaattttgcttatattttgaaacggagggagtata 6048108  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 7354800 - 7354765
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagtat 36  Q
    |||||||||||||||||||| |||||||||||||||    
T  7354800 gtgaattttgcttatattttgaaacggagggagtat 7354765  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 19908535 - 19908504
Alignment:
Q  1 gtgaattttgcttatattttaaaacggaggga 32  Q
    ||||||||||||||||||||||||||||||||    
T  19908535 gtgaattttgcttatattttaaaacggaggga 19908504  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 27692632 - 27692597
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagtat 36  Q
    |||||||||||||||||||||||||||| |||||||    
T  27692632 gtgaattttgcttatattttaaaacggaaggagtat 27692597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 33618307 - 33618342
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagtat 36  Q
    |||||||||||||||||||| |||||||||||||||    
T  33618307 gtgaattttgcttatattttgaaacggagggagtat 33618342  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 7728462 - 7728428
Alignment:
Q  2 tgaattttgcttatattttaaaacggagggagtat 36  Q
    ||||||||||||||||||| |||||||||||||||    
T  7728462 tgaattttgcttatattttgaaacggagggagtat 7728428  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 18649651 - 18649617
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagta 35  Q
    |||||||||||||||||||| ||||||||||||||    
T  18649651 gtgaattttgcttatattttgaaacggagggagta 18649617  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 29573841 - 29573807
Alignment:
Q  4 aattttgcttatattttaaaacggagggagtatat 38  Q
    |||||||||||||||| ||||||||||||||||||    
T  29573841 aattttgcttatatttaaaaacggagggagtatat 29573807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 40846574 - 40846608
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagta 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  40846574 gtgaattttgtttatattttaaaacggagggagta 40846608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 42792765 - 42792799
Alignment:
Q  2 tgaattttgcttatattttaaaacggagggagtat 36  Q
    ||||||||||||||||||||||||||| |||||||    
T  42792765 tgaattttgcttatattttaaaacggatggagtat 42792799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 36
Target Start/End: Original strand, 26567752 - 26567781
Alignment:
Q  7 tttgcttatattttaaaacggagggagtat 36  Q
    ||||||||||||||||||||||||||||||    
T  26567752 tttgcttatattttaaaacggagggagtat 26567781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 14152217 - 14152185
Alignment:
Q  4 aattttgcttatattttaaaacggagggagtat 36  Q
    |||||||||||||||| ||||||||||||||||    
T  14152217 aattttgcttatatttaaaaacggagggagtat 14152185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 42263044 - 42263012
Alignment:
Q  2 tgaattttgcttatattttaaaacggagggagt 34  Q
    ||||||||||||||||||| |||||||||||||    
T  42263044 tgaattttgcttatattttgaaacggagggagt 42263012  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 45145632 - 45145595
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagtatat 38  Q
    |||||||||||||||||||| |||||||||||||||||    
T  45145632 gtgaattttgcttatattttgaaacggagggagtatat 45145595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 9203499 - 9203539
Alignment:
Q  6 ttttgcttatattttaaaacggagggagtatatctttaact 46  Q
    |||||||||||||| |||||||||||||||||| |||||||    
T  9203499 ttttgcttatatttaaaaacggagggagtatatttttaact 9203539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 4786732 - 4786697
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagtat 36  Q
    |||||||||||||||||||| |||||||||||||||    
T  4786732 gtgaattttgcttatattttgaaacggagggagtat 4786697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 18126085 - 18126054
Alignment:
Q  1 gtgaattttgcttatattttaaaacggaggga 32  Q
    ||||||||||||||||||||||||||||||||    
T  18126085 gtgaattttgcttatattttaaaacggaggga 18126054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 19163429 - 19163464
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagtat 36  Q
    |||||||||||||||||||| |||||||||||||||    
T  19163429 gtgaattttgcttatattttgaaacggagggagtat 19163464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 38815913 - 38815948
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagtat 36  Q
    |||||||||||||||||||| |||||||||||||||    
T  38815913 gtgaattttgcttatattttgaaacggagggagtat 38815948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 5526607 - 5526641
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagta 35  Q
    |||||||||||||||||||| ||||||||||||||    
T  5526607 gtgaattttgcttatattttgaaacggagggagta 5526641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 30245614 - 30245648
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagta 35  Q
    ||||||||| |||||||||||||||||||||||||    
T  30245614 gtgaattttacttatattttaaaacggagggagta 30245648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 33473014 - 33472980
Alignment:
Q  2 tgaattttgcttatattttaaaacggagggagtat 36  Q
    ||||||||||||||||||| |||||||||||||||    
T  33473014 tgaattttgcttatattttgaaacggagggagtat 33472980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 38815833 - 38815799
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagta 35  Q
    |||||||||||||||||||| ||||||||||||||    
T  38815833 gtgaattttgcttatattttgaaacggagggagta 38815799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 5526525 - 5526488
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagtatat 38  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  5526525 gtgaattttgcatatattttgaaacggagggagtatat 5526488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 33570618 - 33570651
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagt 34  Q
    ||||||||| ||||||||||||||||||||||||    
T  33570618 gtgaattttacttatattttaaaacggagggagt 33570651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 8769671 - 8769635
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagtata 37  Q
    |||||||||||||||||||| ||||||| ||||||||    
T  8769671 gtgaattttgcttatattttgaaacggatggagtata 8769635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 40305042 - 40305006
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagtata 37  Q
    |||||||||||||||||||| | ||||||||||||||    
T  40305042 gtgaattttgcttatattttgatacggagggagtata 40305006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 40739604 - 40739636
Alignment:
Q  4 aattttgcttatattttaaaacggagggagtat 36  Q
    ||||||||||||||||| |||||||||||||||    
T  40739604 aattttgcttatattttgaaacggagggagtat 40739636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 42666229 - 42666261
Alignment:
Q  3 gaattttgcttatattttaaaacggagggagta 35  Q
    |||||||||||||||||| ||||||||||||||    
T  42666229 gaattttgcttatattttgaaacggagggagta 42666261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 43844751 - 43844719
Alignment:
Q  4 aattttgcttatattttaaaacggagggagtat 36  Q
    |||||||||||||||| ||||||||||||||||    
T  43844751 aattttgcttatatttaaaaacggagggagtat 43844719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0633 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 5435 - 5470
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagtat 36  Q
    |||||||||||||||||||| |||||||||||||||    
T  5435 gtgaattttgcttatattttgaaacggagggagtat 5470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 36440 - 36406
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagta 35  Q
    |||||||||||||||||||| ||||||||||||||    
T  36440 gtgaattttgcttatattttgaaacggagggagta 36406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 36520 - 36554
Alignment:
Q  1 gtgaattttgcttatattttaaaacggagggagta 35  Q
    ||||||||||||||||||||| |||||||||||||    
T  36520 gtgaattttgcttatattttagaacggagggagta 36554  T

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Target: scaffold0321 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 1660 - 1628
Alignment:
Q  4 aattttgcttatattttaaaacggagggagtat 36  Q
    ||||||||||||||||| |||||||||||||||    
T  1660 aattttgcttatattttgaaacggagggagtat 1628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 491879 - 491847
Alignment:
Q  2 tgaattttgcttatattttaaaacggagggagt 34  Q
    ||||||||||||||||||| |||||||||||||    
T  491879 tgaattttgcttatattttgaaacggagggagt 491847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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