View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20702_high_24 (Length: 252)
Name: NF20702_high_24
Description: NF20702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20702_high_24 |
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| [»] chr3 (3 HSPs) |
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| [»] chr1 (4 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 3 - 252
Target Start/End: Complemental strand, 32925839 - 32925590
Alignment:
| Q |
3 |
tcgagtgagatgaaagatatcatacaaattttattaactaaaatagggagtgtcacccctatcactcgcaacaagttggtgtttgatggtatccaactgg |
102 |
Q |
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|||||| | |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32925839 |
tcgagtaatatgaaagatatcatacaaattttattaagtaaaatagggagtgtcgcccctatcactcacaacaagttggtgtttgatggtatccaactgg |
32925740 |
T |
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| Q |
103 |
ttgtctcaattacagtttcagctgtttatgcgcaatcgcaagttttagagcaggcattcaacaatactatatttcaaccgcattagttaggcccactcat |
202 |
Q |
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||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32925739 |
ttgtctcaactacagtttcagctgtttatgcgcaattgcaagttttagagcgggcattcgacaatactatatttcaaccgcattagttaggcccactcat |
32925640 |
T |
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| Q |
203 |
gaagcatgttggcaatgtgatgataatgatacaatggttcttaatgtgga |
252 |
Q |
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| T |
32925639 |
gaagcatgttggcaaagtgatgataatgatacaatggttcttaatgtgga |
32925590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 206
Target Start/End: Complemental strand, 34545981 - 34545882
Alignment:
| Q |
105 |
gtctcaattacagtttcagctgtttatgcgcaatcgcaagttttagagcaggcattcaacaatactatatttcaaccgcattagttaggcccactcatga |
204 |
Q |
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||||||| |||| ||||||||||| ||||||||| |||||||| ||| | ||||| |||||| ||| |||||||||| ||||||||||||||||||| |
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| T |
34545981 |
gtctcaactacaatttcagctgttcatgcgcaattgcaagtttcgcagctgacattcgacaatattat--ttcaaccgcactagttaggcccactcatga |
34545884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 252
Target Start/End: Original strand, 33293461 - 33293526
Alignment:
| Q |
187 |
agttaggcccactcatgaagcatgttggcaatgtgatgataatgatacaatggttcttaatgtgga |
252 |
Q |
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||||||| |||||| ||||| | | | |||| ||||| ||||||||||||||||||||||||||| |
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| T |
33293461 |
agttaggtccactcgtgaagtacgcttgcaacatgatggtaatgatacaatggttcttaatgtgga |
33293526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 9e-51; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 68 - 252
Target Start/End: Original strand, 33928731 - 33928913
Alignment:
| Q |
68 |
tcgcaacaagttggtgtttgatggtatccaactggttgtctcaattacagtttcagctgtttatgcgcaatcgcaagttttagagcaggcattcaacaat |
167 |
Q |
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||||||||||||||||||||||||||| |||||| | ||||||| |||| |||| || |||||| |||||| |||||||| | || ||||||| ||||| |
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| T |
33928731 |
tcgcaacaagttggtgtttgatggtattcaactgctagtctcaactacaatttctgcagtttatacgcaattgcaagtttcacagagggcattcgacaat |
33928830 |
T |
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| Q |
168 |
actatatttcaaccgcattagttaggcccactcatgaagcatgttggcaatgtgatgataatgatacaatggttcttaatgtgga |
252 |
Q |
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||||| |||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||| |
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| T |
33928831 |
actat--ttcaaccgcattagttaggcccactcatgaagtatgttggcaacatggtgataatgatacaatggttcttaatgtgga |
33928913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 65 - 249
Target Start/End: Original strand, 37501865 - 37502047
Alignment:
| Q |
65 |
cactcgcaacaagttggtgtttgatggtatccaactggttgtctcaattacagtttcagctgtttatgcgcaatcgcaagttttagagcaggcattcaac |
164 |
Q |
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||||||||||||||||||| |||||| ||||||| | ||||||| || ||||||| |||||||| ||||| |||||||| | | | |||||||||| |
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| T |
37501865 |
cactcgcaacaagttggtgattgatgttatccaatcaatagtctcaactatagtttcaattgtttatgtgcaattgcaagtttcacaacgggcattcaac |
37501964 |
T |
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| Q |
165 |
aatactatatttcaaccgcattagttaggcccactcatgaagcatgttggcaatgtgatgataatgatacaatggttcttaatgt |
249 |
Q |
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|||| ||| || ||||||||||||||||||||||||||||| ||||| | | || ||||||||||||||||||||||||||| |
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| T |
37501965 |
aatattatttt--aaccgcattagttaggcccactcatgaagtatgttagtagcatggtgataatgatacaatggttcttaatgt |
37502047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 37501782 - 37501845
Alignment:
| Q |
3 |
tcgagtgagatgaaagatatcatacaaattttattaactaaaatagggagtgtcacccctatca |
66 |
Q |
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|||||| | |||| ||||||||||||||| ||||||| ||| |||||||||||||||||||||| |
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| T |
37501782 |
tcgagtaatatgagagatatcatacaaatgttattaaataagatagggagtgtcacccctatca |
37501845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 147
Target Start/End: Original strand, 10621783 - 10621860
Alignment:
| Q |
70 |
gcaacaagttggtgtttgatggtatccaactggttgtctcaattacagtttcagctgtttatgcgcaatcgcaagttt |
147 |
Q |
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|||| |||||||||||||||||||| ||||| | || ||| ||| ||||||| ||||||| |||||| |||||||| |
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| T |
10621783 |
gcaagaagttggtgtttgatggtattcaacttataatcccaactactgtttcagttgtttatacgcaattgcaagttt |
10621860 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 72 - 252
Target Start/End: Original strand, 36284272 - 36284453
Alignment:
| Q |
72 |
aacaagttggtgtttgatggtatccaactggttgtctcaattacagtttcagctgtttatgcgcaatcgcaagttttagagcaggcattcaacaatacta |
171 |
Q |
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||||||||||||||||||||||| |||||| | ||||||| ||| |||||| || ||| ||| |||| |||||||| | ||| | |||| |||||| | |
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| T |
36284272 |
aacaagttggtgtttgatggtattcaactgatagtctcaaatacggtttcatctatttttgcacaattgcaagtttcatagcggacatttgacaatattg |
36284371 |
T |
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| Q |
172 |
tatttcaaccgcattagttaggcccactcatgaagcatgttggcaat---gtgatgataatgatacaatggttcttaatgtgga |
252 |
Q |
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| ||||||||| ||||||||| |||||| ||||| |||||||||| ||||||||||||||| ||||||||||||| |||| |
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| T |
36284372 |
t--ttcaaccgctttagttaggtccactcgtgaagtatgttggcaacatggtgatgataatgatataatggttcttaatatgga |
36284453 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 65 - 147
Target Start/End: Original strand, 32331576 - 32331658
Alignment:
| Q |
65 |
cactcgcaacaagttggtgtttgatggtatccaactggttgtctcaattacagtttcagctgtttatgcgcaatcgcaagttt |
147 |
Q |
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||||||||||||||||||||||||||||||||||||| | ||| || | ||||||| |||||||| ||||||| |||||||| |
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| T |
32331576 |
cactcgcaacaagttggtgtttgatggtatccaactgatagtccgaactgcagtttctgctgtttacgcgcaattgcaagttt |
32331658 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 66 - 252
Target Start/End: Original strand, 43190049 - 43190234
Alignment:
| Q |
66 |
actcgcaacaagttggtgtttgatggtatccaactggttgtctcaattacagtttcagctgtttatgcgcaatc-gcaagttttagagcaggcattcaac |
164 |
Q |
| |
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||||| |||||||||||||||||||||||||||||| | || || |||| ||| || ||||| |||||| | |||||||| | ||| ||||| || |
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| T |
43190049 |
actcgtaacaagttggtgtttgatggtatccaactgatactcctaactacattttaagttgtttgtgcgcagtttgcaagtttcacagcgagcatttgac |
43190148 |
T |
|
| Q |
165 |
aatactatatttcaaccgcattagttaggcccactcatgaagcatgttggcaatgtgatgataatgatacaatggttcttaatgtgga |
252 |
Q |
| |
|
| || | | |||| |||| |||||||| |||||||||||||||||||||||| |||||||||| || | |||||||||||||| |
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|
| T |
43190149 |
agtattgt--ttcagccgctttagttagacccactcatgaagcatgttggcaacacagtgataatgatgcacttgttcttaatgtgga |
43190234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 252
Target Start/End: Complemental strand, 42347169 - 42346995
Alignment:
| Q |
72 |
aacaagttggtgtttgatggtatccaactggttgtctcaattacagtttcagctgtttatgcgcaatcgcaagttttagagcaggcattcaacaatacta |
171 |
Q |
| |
|
|||||||||||||| |||||||||||||| | ||||||| ||| ||||||| ||||| |||||| |||||||| | || |||||||||||| | |
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| T |
42347169 |
aacaagttggtgtt-gatggtatccaactaatagtctcaactacggtttcag---tttattcgcaattgcaagtttcacagtgcacattcaacaatattg |
42347074 |
T |
|
| Q |
172 |
tatttcaaccgcattagttaggcccactcatgaagcatgttggcaatgtgatgataatgatacaatggttcttaatgtgga |
252 |
Q |
| |
|
| ||||||| | |||||||||||||||||||| ||||||||| || ||||||||||| || ||| || |||||||| |
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|
| T |
42347073 |
t--ttcaaccagttgagttaggcccactcatgaagtatgttggcagcatggtgataatgataaaacggtactcaatgtgga |
42346995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 32331493 - 32331554
Alignment:
| Q |
3 |
tcgagtgagatgaaagatatcatacaaattttattaactaaaatagggagtgtcacccctat |
64 |
Q |
| |
|
|||||| | |||| ||||||||||||||| ||||||| ||| ||||| |||||| ||||||| |
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|
| T |
32331493 |
tcgagtaatatgagagatatcatacaaatgttattaagtaagataggaagtgtcgcccctat |
32331554 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 249
Target Start/End: Original strand, 3548880 - 3548943
Alignment:
| Q |
186 |
tagttaggcccactcatgaagcatgttggcaatgtgatgataatgatacaatggttcttaatgt |
249 |
Q |
| |
|
||||||||||||||||||||| |||||||||| || |||||| |||||||||||||||||| |
|
|
| T |
3548880 |
tagttaggcccactcatgaagtatgttggcaacatggaaataatggtacaatggttcttaatgt |
3548943 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 249
Target Start/End: Original strand, 10406313 - 10406390
Alignment:
| Q |
172 |
tatttcaaccgcattagttaggcccactcatgaagcatgttggcaatgtgatgataatgatacaatggttcttaatgt |
249 |
Q |
| |
|
|||||||||||||||| ||||| ||| |||||||| ||| ||||| || |||||||||||||||| ||||||||| |
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|
| T |
10406313 |
tatttcaaccgcattaattaggtccattcatgaagtatgctggcagcatggtgataatgatacaatgactcttaatgt |
10406390 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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