View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20702_high_33 (Length: 213)
Name: NF20702_high_33
Description: NF20702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20702_high_33 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 144; Significance: 7e-76; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 52 - 199
Target Start/End: Original strand, 35236719 - 35236866
Alignment:
| Q |
52 |
caaatattcttgtaggaccgctcaaactatgcatttaacatgaaagtagcccatattctaatacatgctcaaatgtaaatgcaaccaaaatagaacaaag |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35236719 |
caaatattcttgtaggaccgctcaaactatgcatttaacatgaaagtagcccatattctaatacatgctcaaatgtaaatgcaaccaaaatagaacaaag |
35236818 |
T |
|
| Q |
152 |
cattatcgtaactagaaacctggaattaaaaatcaaaagccatctgtg |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35236819 |
cattatcgtaactagaaacctggaattaaaaatcaaaagccatttgtg |
35236866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 52 - 199
Target Start/End: Original strand, 29291155 - 29291302
Alignment:
| Q |
52 |
caaatattcttgtaggaccgctcaaactatgcatttaacatgaaagtagcccatattctaatacatgctcaaatgtaaatgcaaccaaaatagaacaaag |
151 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||| |||||||||||||||||| |
|
|
| T |
29291155 |
caaatattcttgtagtaccgctcaaactatgcatttaacatgaaagtagcccatattctaatataggctcaaatgtgaatttaaccaaaatagaacaaag |
29291254 |
T |
|
| Q |
152 |
cattatcgtaactagaaacctggaattaaaaatcaaaagccatctgtg |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
29291255 |
cattatcgtaactagaaacctggaattaaaattcaaaagccatttgtg |
29291302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 35236649 - 35236696
Alignment:
| Q |
18 |
atttgatctataaccggcctgacaattaatctcgcaaatattcttgta |
65 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35236649 |
atttgatctataaccggcctgacaattaatctcgcaaatattattgta |
35236696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 29291082 - 29291123
Alignment:
| Q |
18 |
atttgatctataaccggcctgacaattaatctcgcaaatatt |
59 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29291082 |
atttgatctataaccggcctgacaattaatctcgcaaatatt |
29291123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University