View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20702_high_6 (Length: 504)
Name: NF20702_high_6
Description: NF20702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20702_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 38181350 - 38181663
Alignment:
| Q |
1 |
cttccacttccttcacctatgatgcttgatgaaaatggaaagaagccaatttcattggaggacgatgttgaagcaaaccttgatgatttcatggatttga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38181350 |
cttccacttccttcacctatgatgcttgatgaaaaagggaagaagccaatttcattggaggacgatgttgaagcaaaccttgatgatttcatggatttga |
38181449 |
T |
|
| Q |
101 |
ttgacttcagtaatttggaggacgatgttgaagccggcagtcgtttatttcacaatgatg----ataacagtaacttgcatgacacgatataaaaagctt |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38181450 |
ttgacttcagtaatttggaggacgatgttgaagccggcagtcgtttatttgacaatgatgatatataacagtaacttgcatgacacgatataaaaagctt |
38181549 |
T |
|
| Q |
197 |
atagtgtttgcaacacaatttttctgtaattttcttctgagaattgagnnnnnnnnnngtctaaacgatgctatttgacaaatctataaaatgaattcta |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
38181550 |
atagtgtttgcaacacaatttttctgtaattttcttctgagaattgag--ttttctttgtctaaacgatactatttgacaaatctataaaattaattcta |
38181647 |
T |
|
| Q |
297 |
ctttatgcaatatgtc |
312 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
38181648 |
ctttatgcaatatgtc |
38181663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 38189781 - 38189468
Alignment:
| Q |
1 |
cttccacttccttcacctatgatgcttgatgaaaatggaaagaagccaatttcattggaggacgatgttgaagcaaaccttgatgatttcatggatttga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38189781 |
cttccacttccttcacctatgatgcttgatgaaaaagggaagaagccaatttcattggaggacgatgttgaagcaaaccttgatgatttcatggatttga |
38189682 |
T |
|
| Q |
101 |
ttgacttcagtaatttggaggacgatgttgaagccggcagtcgtttatttcacaatgatg----ataacagtaacttgcatgacacgatataaaaagctt |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38189681 |
ttgacttcagtaatttggaggacgatgttgaagccggcagtcgtttatttgacaatgatgatatataacagtaacttgcatgacacgatataaaaagctt |
38189582 |
T |
|
| Q |
197 |
atagtgtttgcaacacaatttttctgtaattttcttctgagaattgagnnnnnnnnnngtctaaacgatgctatttgacaaatctataaaatgaattcta |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
38189581 |
atagtgtttgcaacacaatttttctgtaattttcttctgagaattgag--ttttctttgtctaaacgatactatttgacaaatctataaaattaattcta |
38189484 |
T |
|
| Q |
297 |
ctttatgcaatatgtc |
312 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
38189483 |
ctttatgcaatatgtc |
38189468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 38217006 - 38216693
Alignment:
| Q |
1 |
cttccacttccttcacctatgatgcttgatgaaaatggaaagaagccaatttcattggaggacgatgttgaagcaaaccttgatgatttcatggatttga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38217006 |
cttccacttccttcacctatgatgcttgatgaaaaagggaagaagccaatttcattggaggacgatgttgaagcaaaccttgatgatttcatggatttga |
38216907 |
T |
|
| Q |
101 |
ttgacttcagtaatttggaggacgatgttgaagccggcagtcgtttatttcacaatgatg----ataacagtaacttgcatgacacgatataaaaagctt |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38216906 |
ttgacttcagtaatttggaggacgatgttgaagccggcagtcgtttatttgacaatgatgatatataacagtaacttgcatgacacgatataaaaagctt |
38216807 |
T |
|
| Q |
197 |
atagtgtttgcaacacaatttttctgtaattttcttctgagaattgagnnnnnnnnnngtctaaacgatgctatttgacaaatctataaaatgaattcta |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
38216806 |
atagtgtttgcaacacaatttttctgtaattttcttctgagaattgag--ttttctttgtctaaacgatactatttgacaaatctataaaattaattcta |
38216709 |
T |
|
| Q |
297 |
ctttatgcaatatgtc |
312 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
38216708 |
ctttatgcaatatgtc |
38216693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 38208574 - 38208889
Alignment:
| Q |
1 |
cttccacttccttcacctatgatgcttgatgaaaatggaaagaagccaatttcattggaggac-gat-gttgaagcaaaccttgatgatttcatggattt |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38208574 |
cttccacttccttcacctatgatgcttgatgaaaaagggaagaagccaatttcattggaggaccgatcgttgaagcaaaccttgatgatttcatggattt |
38208673 |
T |
|
| Q |
99 |
gattgacttcagtaatttggaggacgatgttgaagccggcagtcgtttatttcacaatgatg----ataacagtaacttgcatgacacgatataaaaagc |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38208674 |
gattgacttcagtaatttggaggacgatgttgaagccggcagtcgtttatttgacaatgatgatatataacagtaacttgcatgacacgatataaaaagc |
38208773 |
T |
|
| Q |
195 |
ttatagtgtttgcaacacaatttttctgtaattttcttctgagaattgagnnnnnnnnnngtctaaacgatgctatttgacaaatctataaaatgaattc |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
38208774 |
ttatagtgtttgcaacacaatttttctgtaattttcttctgagaattgag--ttttctttgtctaaacgatactatttgacaaatctataaaattaattc |
38208871 |
T |
|
| Q |
295 |
tactttatgcaatatgtc |
312 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
38208872 |
tactttatgcaatatgtc |
38208889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 38456711 - 38457054
Alignment:
| Q |
1 |
cttccacttccttcacctatgatgcttgatgaaaatggaaagaagccaatttcattggaggacgatgttgaagcaaaccttgatgatttcatggatttga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38456711 |
cttccacttccttcacctatgatgcttgatgaaaatgggaagaagccaatttcattggaggacgattttgaagcaaaccttgatgatttcatggatttga |
38456810 |
T |
|
| Q |
101 |
ttgacttcagtaatttggaggacgatgttgaagccggcagtcgtttatttcacaatgatg------ataacagtaacttgcatgacacgatataaaaagc |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
38456811 |
ttgacttcagtaatttggaggacgatgttgaagccggcagtcgtttatttgacaatgatgatatatataacagtaacttgcatgacaagatataaaaagc |
38456910 |
T |
|
| Q |
195 |
ttatagtgtttgcaacacaatttttctgtaattttcttctgagaattgagnnnnnnnnnngtctaaacgatgctatttgacaaatctataaaatgaattc |
294 |
Q |
| |
|
||||| |||||||||||||| ||||||||| ||||||||||||||||||| || ||||||||| ||||||||| || ||| |||| ||||| |
|
|
| T |
38456911 |
ttatattgtttgcaacacaacttttctgtatttttcttctgagaattgag----ttttttgtttaaacgatgttatttgacagatatattaaattaattc |
38457006 |
T |
|
| Q |
295 |
tactttatgcaatatgtctctattaattactctttttgattgaatatcagaa |
346 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38457007 |
tactttatgcaatatgtctct----attactctttttgattgaatatcagaa |
38457054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 26 - 346
Target Start/End: Complemental strand, 26032771 - 26032448
Alignment:
| Q |
26 |
ttgatgaaaatggaaagaagccaatttcattggaggacgatgttgaagcaaacct---tgatgatttcatggat---------ttgattgacttcagtaa |
113 |
Q |
| |
|
|||||||||| || |||||||| ||||| |||||||||||||||||||||||||| |||||| ||||||||| | |||||||||||||| |
|
|
| T |
26032771 |
ttgatgaaaaagggaagaagcctatttcgttggaggacgatgttgaagcaaacctccttgatgacttcatggatccatttctatgtattgacttcagtaa |
26032672 |
T |
|
| Q |
114 |
tttggaggacgatgttgaagccggcagtcgtttatttcacaatgatgataacagtaacttgcatgacacgatataaaaagcttatagtgtttgcaacaca |
213 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26032671 |
tttggaggacgatgttgaagccggcggtcgtttatttgacaatgatgataaccgtaacttgcatgacacgatataaaaagcttatagtgtttgcaacaca |
26032572 |
T |
|
| Q |
214 |
atttttctgtaattttcttctgagaattgagnnnnnnnnnngtctaaacgatgctatttgacaaatctataaaatgaattctactttatgcaatatgtct |
313 |
Q |
| |
|
|| ||||||| ||||| |||||||||||||| |||||||||||| ||||||||| || ||| |||| |||||||||||||||||||||||| |
|
|
| T |
26032571 |
atgtttctgt-attttgttctgagaattgag----ttttttgtctaaacgatgttatttgacagatgtattaaattaattctactttatgcaatatgtct |
26032477 |
T |
|
| Q |
314 |
ctattaattactctttttgattgaatatcagaa |
346 |
Q |
| |
|
|| |||||||||||||||||||||||||| |
|
|
| T |
26032476 |
ct----gttactctttttgattgaatatcagaa |
26032448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 100 - 312
Target Start/End: Complemental strand, 38172025 - 38171817
Alignment:
| Q |
100 |
attgacttcagtaatttggaggacgatgttgaagccggcagtcgtttatttcacaatgatgataacagtaacttgcatgacacgatataaaaagcttata |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38172025 |
attgacttcagtaatttggaggacgatgttgaaaccggcggtcgtttatttgacaatgatgataacagtaacttgcatgacacgatataaaaagcttata |
38171926 |
T |
|
| Q |
200 |
gtgtttgcaacacaatttttctgtaattttcttctgagaattgagnnnnnnnnnngtctaaacgatgctatttgacaaatctataaaatgaattctactt |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| || | ||||| |||| |
|
|
| T |
38171925 |
gtgtttgcaacacaatttttctgtaattttcttctgagaattgag----ttttttgtctaaacgatgttatttgacaaatctattaagttaattccactt |
38171830 |
T |
|
| Q |
300 |
tatgcaatatgtc |
312 |
Q |
| |
|
||||||||||||| |
|
|
| T |
38171829 |
tatgcaatatgtc |
38171817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 337 - 484
Target Start/End: Complemental strand, 38457195 - 38457070
Alignment:
| Q |
337 |
aatatcagaagcttggaaatgactttaactataatgtagaataacatatgctgacagtatacaaatcacatttagacctttcctcaagagataacctcac |
436 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
38457195 |
aatatcagaagcttggaaatgtctttaactataatgtagaag------ttctgacagtatacaaatcacatttagaccttttctcaagaa---------- |
38457112 |
T |
|
| Q |
437 |
tctaattgtagttcttcaccaagttatcactccttgtgcgtacgttta |
484 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
38457111 |
------tgtagttcttcaccaagttatcactccttgtacgtacgttta |
38457070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 53351013 - 53350943
Alignment:
| Q |
26 |
ttgatgaaaatggaaagaagccaatttcattggaggacgatgttgaagcaaaccttgatgatttcatggat |
96 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||| || |||||| |
|
|
| T |
53351013 |
ttgatgaaaaaggaaagaagccaatttctttgaaggacgatgttgaagcaaaccttgatgacttgatggat |
53350943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 419 - 478
Target Start/End: Original strand, 53348908 - 53348967
Alignment:
| Q |
419 |
ctcaagagataacctcactctaattgtagttcttcaccaagttatcactccttgtgcgta |
478 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||| | |||||||| |||| |
|
|
| T |
53348908 |
ctcaggagataacctcactctagttgtagttcttcaccaagttaccgctccttgtacgta |
53348967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University