View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20702_high_7 (Length: 450)
Name: NF20702_high_7
Description: NF20702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20702_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Complemental strand, 16946608 - 16946181
Alignment:
| Q |
1 |
caaacaaacagattcaaatgcaagaaatgaagatcaagacgacgagtccaatagcaaagtacgaaatagtagagatcaagagaaagagagaaataataga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16946608 |
caaacaaacagattcaaatgcaagaaatgaagatcaagacgatgagtccaatagcaaagtacgaaatagtagagatcaagagaaagagagaaataataga |
16946509 |
T |
|
| Q |
101 |
attttgacaagaacatctacatgtgaaacaattaaagtttcaggaaaggtgcctttgaagctctctgatagaaatactcttaacaacctaagtcaggatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
16946508 |
attttgacaagaacatctacatgtgaaacaattaacgtttcaggaaaggtgcctttgaagctctctgagagaaatactcctaacaacctaagtcaggatg |
16946409 |
T |
|
| Q |
201 |
caaagtgcctaagccatgaaagaagtttggatttcacgaaaatagaaaatgtagataaggtataattatatcttgtatatggtggagcacttaagacagc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16946408 |
caaagtgcctaagccatgaaagaagtttggatttcacgaaaatagaaaatgtagataaggtataattatatcttgtatatggtggagcacttaagacagc |
16946309 |
T |
|
| Q |
301 |
gttannnnnnnngtcaacaaaccaaaccagatttctttttggcattatcttaatgttgattaatagaatcaaactgtgtattttttgtgttacagaatgt |
400 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16946308 |
gttattttttttgtcaacaaaccaaaccagatttctttttggcattatcttaatgttgattaatagaatcaaactgtgtattttttgtgttacagaatgt |
16946209 |
T |
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| Q |
401 |
accatatactgaaaccggaaccgaggtg |
428 |
Q |
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| T |
16946208 |
accatatactgaaaccggaaccgaggtg |
16946181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Complemental strand, 17017273 - 17016846
Alignment:
| Q |
1 |
caaacaaacagattcaaatgcaagaaatgaagatcaagacgacgagtccaatagcaaagtacgaaatagtagagatcaagagaaagagagaaataataga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17017273 |
caaacaaacagattcaaatgcaagaaatgaagatcaagacgatgagtccaatagcaaagtacgaaatagtagagatcaagagaaagagagaaataataga |
17017174 |
T |
|
| Q |
101 |
attttgacaagaacatctacatgtgaaacaattaaagtttcaggaaaggtgcctttgaagctctctgatagaaatactcttaacaacctaagtcaggatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
17017173 |
attttgacaagaacatctacatgtgaaacaattaacgtttcaggaaaggtgcctttgaagctctctgagagaaatactcctaacaacctaagtcaggatg |
17017074 |
T |
|
| Q |
201 |
caaagtgcctaagccatgaaagaagtttggatttcacgaaaatagaaaatgtagataaggtataattatatcttgtatatggtggagcacttaagacagc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17017073 |
caaagtgcctaagccatgaaagaagtttggatttcacgaaaatagaaaatgtagataaggtataattatatcttgtatatggtggagcacttaagacagc |
17016974 |
T |
|
| Q |
301 |
gttannnnnnnngtcaacaaaccaaaccagatttctttttggcattatcttaatgttgattaatagaatcaaactgtgtattttttgtgttacagaatgt |
400 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17016973 |
gttattttttttgtcaacaaaccaaaccagatttctttttggcattatcttaatgttgattaatagaatcaaactgtgtattttttgtgttacagaatgt |
17016874 |
T |
|
| Q |
401 |
accatatactgaaaccggaaccgaggtg |
428 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
17016873 |
accatatactgaaaccggaaccgaggtg |
17016846 |
T |
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