View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20702_low_1 (Length: 733)

Name: NF20702_low_1
Description: NF20702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20702_low_1
NF20702_low_1
[»] chr4 (4 HSPs)
chr4 (382-715)||(51358335-51358667)
chr4 (184-312)||(51358137-51358265)
chr4 (42-127)||(51357960-51358045)
chr4 (227-268)||(32451537-32451578)
[»] chr5 (2 HSPs)
chr5 (227-294)||(12167260-12167327)
chr5 (226-309)||(14537246-14537329)
[»] chr3 (1 HSPs)
chr3 (241-308)||(32908574-32908641)
[»] chr6 (4 HSPs)
chr6 (230-292)||(2425310-2425372)
chr6 (226-294)||(2428621-2428689)
chr6 (255-308)||(7088922-7088975)
chr6 (255-308)||(8803339-8803392)
[»] chr1 (3 HSPs)
chr1 (591-665)||(4949035-4949109)
chr1 (592-651)||(191436-191495)
chr1 (226-289)||(44895343-44895406)
[»] chr2 (5 HSPs)
chr2 (592-661)||(38833777-38833846)
chr2 (588-671)||(13789878-13789961)
chr2 (226-309)||(27330842-27330925)
chr2 (597-651)||(489692-489746)
chr2 (592-669)||(14232994-14233071)


Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 382 - 715
Target Start/End: Original strand, 51358335 - 51358667
Alignment:
Q  382 tatattaacatcaaacttaatgatggttgacgggattaactcttgaaaatggaaagaggaagatggaagatatgataatgnnnnnnnnntacagattttg 481  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||         |||||||||||    
T  51358335 tatattaacatcaaacttaatgatggttgacgggattaactcttgaaaatggaaagaggaagatggaagatatgatagtgaaaaaaaa-tacagattttg 51358433  T
Q  482 atctttggttttgtaaaacaaactttttaagtataaatatttcaaaaacgtctcttactctatgaaactgtcaagttggttaataaatttaaattcttac 581  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  51358434 atctatggttttgtaaaacaaactttttaattataaatatttcaaaaacgtctcttactctatgaaactgtcaaattggttaataaatttaaattcttac 51358533  T
Q  582 tatcgatctctatattttaacaatttactattaatttaatctctatctttaaccattaattatcaatttattcactaacatattttcaaatagactaatg 681  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  51358534 catcgatctctatattttaacaatttactattaatttaatctctatctttaaccaccaattatcaatttattcactaacatattttcaaatagactaatg 51358633  T
Q  682 atgagtaagatttgattgagcaaagtaacttgag 715  Q
    ||||||||||||||||||||||||||||||||||    
T  51358634 atgagtaagatttgattgagcaaagtaacttgag 51358667  T

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Target: chr4; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 184 - 312
Target Start/End: Original strand, 51358137 - 51358265
Alignment:
Q  184 ccaaaatgacatttattgtccaattcatctatcggnnnnnnnggccatcaaaggagtagtaatcccttgctcttgtttcccaagcttcaaagtaggtctc 283  Q
    |||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  51358137 ccaaaatgacatttattgtccaattcatctatcggtttttttggccatcaaaggagtagtaatcccttgctcttgtttcccaagctttaaagtaggtctc 51358236  T
Q  284 tgtataatccatccatcttttcgaagttt 312  Q
    |||||||||||||||||||||||||||||    
T  51358237 tgtataatccatccatcttttcgaagttt 51358265  T

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Target: chr4; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 42 - 127
Target Start/End: Original strand, 51357960 - 51358045
Alignment:
Q  42 tctccactccctttaaagataatgatatgacaactctttcccttcatgttttaaaacacagacaatcctccttttaaagatgctga 127  Q
    ||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  51357960 tctccactccctttaaagataatgatattgcaactcttttccttcatgttttaaaacacagacaatcctccttttaaagatgctga 51358045  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 227 - 268
Target Start/End: Complemental strand, 32451578 - 32451537
Alignment:
Q  227 gccatcaaaggagtagtaatcccttgctcttgtttcccaagc 268  Q
    |||||||| ||||| |||||||||||||| ||||||||||||    
T  32451578 gccatcaacggagttgtaatcccttgctcctgtttcccaagc 32451537  T

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Target: chr5 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 227 - 294
Target Start/End: Complemental strand, 12167327 - 12167260
Alignment:
Q  227 gccatcaaaggagtagtaatcccttgctcttgtttcccaagcttcaaagtaggtctctgtataatcca 294  Q
    ||||||||||||||||||||| | |||||||| || |||||||||||||||||||| |||||||||||    
T  12167327 gccatcaaaggagtagtaatctcatgctcttgctttccaagcttcaaagtaggtctttgtataatcca 12167260  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 226 - 309
Target Start/End: Complemental strand, 14537329 - 14537246
Alignment:
Q  226 ggccatcaaaggagtagtaatcccttgctcttgtttcccaagcttcaaagtaggtctctgtataatccatccatcttttcgaag 309  Q
    |||||||||||||| | |||||| |||||||||||| ||||| |||||||||| |||| ||| ||||||  |||| ||||||||    
T  14537329 ggccatcaaaggagcaataatccattgctcttgttttccaagtttcaaagtagatctccgtaaaatccactcatcatttcgaag 14537246  T

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Target: chr3 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 241 - 308
Target Start/End: Complemental strand, 32908641 - 32908574
Alignment:
Q  241 agtaatcccttgctcttgtttcccaagcttcaaagtaggtctctgtataatccatccatcttttcgaa 308  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||||||||||  |||| |||||||    
T  32908641 agtaatcccctgctcttgtttcccaagcttcaaagtagatctctgtataatccagacatcatttcgaa 32908574  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 230 - 292
Target Start/End: Original strand, 2425310 - 2425372
Alignment:
Q  230 atcaaaggagtagtaatcccttgctcttgtttcccaagcttcaaagtaggtctctgtataatc 292  Q
    ||||||| |||||||||| ||||||| ||| |||| |||||||||||||||||||||||||||    
T  2425310 atcaaagaagtagtaatctcttgctcctgtctccccagcttcaaagtaggtctctgtataatc 2425372  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 226 - 294
Target Start/End: Original strand, 2428621 - 2428689
Alignment:
Q  226 ggccatcaaaggagtagtaatcccttgctcttgtttcccaagcttcaaagtaggtctctgtataatcca 294  Q
    ||||||||||| ||| ||||||| |||||||||| |||| |||||| |||||||||| |||||||||||    
T  2428621 ggccatcaaagaagttgtaatcctttgctcttgtctccctagcttcgaagtaggtctttgtataatcca 2428689  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 255 - 308
Target Start/End: Complemental strand, 7088975 - 7088922
Alignment:
Q  255 cttgtttcccaagcttcaaagtaggtctctgtataatccatccatcttttcgaa 308  Q
    ||||| ||||||||||||||||||||||| | |||||||| || || |||||||    
T  7088975 cttgtctcccaagcttcaaagtaggtctccgcataatccacccgtcatttcgaa 7088922  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 255 - 308
Target Start/End: Original strand, 8803339 - 8803392
Alignment:
Q  255 cttgtttcccaagcttcaaagtaggtctctgtataatccatccatcttttcgaa 308  Q
    ||||| ||||||||||||||||||||||| | |||||||| || || |||||||    
T  8803339 cttgtctcccaagcttcaaagtaggtctccgaataatccacccgtcatttcgaa 8803392  T

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Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 591 - 665
Target Start/End: Original strand, 4949035 - 4949109
Alignment:
Q  591 ctatattttaacaatttactattaatttaatctctatctttaaccattaattatcaatttattcactaacatatt 665  Q
    ||||||||||||||||||||||||||||  ||||||| |||||||| | | | |||||||| || ||||||||||    
T  4949035 ctatattttaacaatttactattaatttcgtctctatatttaaccacttactctcaatttagtctctaacatatt 4949109  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 592 - 651
Target Start/End: Original strand, 191436 - 191495
Alignment:
Q  592 tatattttaacaatttactattaatttaatctctatctttaaccattaattatcaattta 651  Q
    |||||||||| |||||||| |||||||  ||  |||||||||||||| ||||||||||||    
T  191436 tatattttaataatttactgttaatttggtccatatctttaaccatttattatcaattta 191495  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 289
Target Start/End: Complemental strand, 44895406 - 44895343
Alignment:
Q  226 ggccatcaaaggagtagtaatcccttgctcttgtttcccaagcttcaaagtaggtctctgtata 289  Q
    ||||||||| ||||| |||||||||||||||| |||   ||||||| |||||||||||| ||||    
T  44895406 ggccatcaatggagttgtaatcccttgctcttatttttgaagcttcgaagtaggtctctctata 44895343  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 592 - 661
Target Start/End: Complemental strand, 38833846 - 38833777
Alignment:
Q  592 tatattttaacaatttactattaatttaatctctatctttaaccattaattatcaatttattcactaaca 661  Q
    |||||||||| |||||||||| ||||| |||| ||| |||||||| | |||||||||||| || ||||||    
T  38833846 tatattttaaaaatttactatcaatttgatctttatgtttaaccacttattatcaatttagtccctaaca 38833777  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 588 - 671
Target Start/End: Complemental strand, 13789961 - 13789878
Alignment:
Q  588 tctctatattttaacaatttactattaatttaatctctatctttaaccattaattatcaatttattcactaacatattttcaaa 671  Q
    ||||||||||||||||| ||||||| ||||| ||||| ||||||||  | | |  ||||||||| || ||||||| ||||||||    
T  13789961 tctctatattttaacaacttactatcaatttgatctcaatctttaataacttagaatcaatttaatctctaacatgttttcaaa 13789878  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 309
Target Start/End: Original strand, 27330842 - 27330925
Alignment:
Q  226 ggccatcaaaggagtagtaatcccttgctcttgtttcccaagcttcaaagtaggtctctgtataatccatccatcttttcgaag 309  Q
    ||||||||||||| ||||| || |||||||||||||||||| | || ||| |||||||  |||||| |||| | | ||||||||    
T  27330842 ggccatcaaaggattagtagtcacttgctcttgtttcccaaacctcgaagcaggtctccatataattcatcaaacatttcgaag 27330925  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 597 - 651
Target Start/End: Complemental strand, 489746 - 489692
Alignment:
Q  597 tttaacaatttactattaatttaatctctatctttaaccattaattatcaattta 651  Q
    |||||| ||||||||| |||||||||||||  |||| ||||| ||||||||||||    
T  489746 tttaaccatttactatcaatttaatctctaagtttatccatttattatcaattta 489692  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 592 - 669
Target Start/End: Complemental strand, 14233071 - 14232994
Alignment:
Q  592 tatattttaacaatttactattaatttaatctctatctttaaccattaattatcaatttattcactaacatattttca 669  Q
    ||||||||||||| ||||| | |||||  ||| |||||||||||  |||||||||||| | || ||||||| ||||||    
T  14233071 tatattttaacaacttactgtcaatttggtctatatctttaacccctaattatcaattcagtccctaacatgttttca 14232994  T

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