View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20702_low_11 (Length: 390)
Name: NF20702_low_11
Description: NF20702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20702_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 10 - 371
Target Start/End: Complemental strand, 39330747 - 39330386
Alignment:
| Q |
10 |
tcatcagaaacatgggaagtgacttggctgcaactcaattcaacaactgttgcactcagaggaagagtgaaggagacgacgatgatggcgatatcgatat |
109 |
Q |
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| T |
39330747 |
tcatgagaaacatgggaagtgacttggctgcaactcaattcaacaactgttgcactcagaggaagagtgaaggagacgacgatgatggtgatattgatat |
39330648 |
T |
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| Q |
110 |
agcacctgcagcatagttgatttagcacccagaagaacacgtgaggtgagaaatgaagagttatagctattagctagcagcacctgagttgtgctgcatt |
209 |
Q |
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| T |
39330647 |
agcacctgcagcatagttgatttagcacccagaagaacacatgaggtgagaaatgaagagttatagatattggctagcagcacctgagttgtgctgcatt |
39330548 |
T |
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| Q |
210 |
tgtagaataagaaatgggggtatttatataaaagttaatctatgtaagcttctatcatgtttgtatttgtgctgaaatttatattactataataggtagt |
309 |
Q |
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| T |
39330547 |
tgtagaataagaaatgggggtatttatataaaaattaatctatgtaagcttctatcatgtttgtatttgtgctgaaatttatattactataataggtagt |
39330448 |
T |
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| Q |
310 |
actgttttattttatggcataatctatgatattctatagagtaacaaagtttattaattatt |
371 |
Q |
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| T |
39330447 |
actgttttattttatggcataatctatgatattctatagagtaacaaggtttattaattatt |
39330386 |
T |
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