View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20702_low_12 (Length: 371)
Name: NF20702_low_12
Description: NF20702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20702_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 353
Target Start/End: Complemental strand, 31437813 - 31437484
Alignment:
| Q |
18 |
attgctccccattttccctatagactctcccttttggagagataccttttcttagaaaggttcactaagcttgatcaacaatctcagtacaaaaaacaac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31437813 |
attgctccccattttccctatagactctcccttttggagagataccttttcttagaaaggttcactaagcttgatcaacaatctcagtacaaaaaacaac |
31437714 |
T |
|
| Q |
118 |
ttgaaaagacttatataaacttattaagatgctcttagacaagtaggaaaatcagcagccagcatgtgactcttactattgtctttttacaaacaaagcc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31437713 |
ttgaaaagacttatataaacttattaagatgctcttagacaagtaggaaaatcagcagccagcatgtgactcttactattgtctttttacaaacaaagcc |
31437614 |
T |
|
| Q |
218 |
gttctcaatatatatactactactactatatagaagattcatgaattgacattcctaagatattgttcaacttgaactttgtttgtgtgacataataata |
317 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31437613 |
gttctcaatatatatactacta------tatagaagattcatgaattgacattcctaagatattgttcaacttgaactttgtttgtgtgacataataata |
31437520 |
T |
|
| Q |
318 |
tgctgttttaatttgtttgttattgtggttatgttc |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
31437519 |
tgctgttttaatttgtttgttattgtggttatgttc |
31437484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University