View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20702_low_13 (Length: 343)
Name: NF20702_low_13
Description: NF20702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20702_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 333
Target Start/End: Complemental strand, 8444372 - 8444065
Alignment:
| Q |
18 |
accatcccttcctctattgatctaggtgactcgtctcaagattagttaaattaattgtatataatgagttattaaacatagtaacttatcaagaatgtaa |
117 |
Q |
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| T |
8444372 |
accatcccttcctctattgatctaggtgactcgtctcaagattagttaaattaattgtatataatgagttattaaacatagtaacttatcaagaatgtac |
8444273 |
T |
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| Q |
118 |
tcatagagtcaacatgttccattcgtatagaaatatataataattaatatacttctatagctatcaagaaaattacaaa-ttgatgaaatatatgaaata |
216 |
Q |
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| T |
8444272 |
tcatagagtcaacatgttccattcgtatataaatatataataattaata----------gctatcaagaaaattacaaaattgatgaaatatatgaacta |
8444183 |
T |
|
| Q |
217 |
gagagagtaattataaaagtaaaaagattatgatgagcatagaaaatcaaagacttagacataataaataaatatt-ttttacctttattcaaaaataca |
315 |
Q |
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| T |
8444182 |
gagagagtaattataaaagtaaaaagattatgatgagcatagaaaatcaaagacttagacataataaataaatatttttttacctttattcaaaaataca |
8444083 |
T |
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| Q |
316 |
cacacaagtaccttcatt |
333 |
Q |
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| T |
8444082 |
cacacaagtaccttcatt |
8444065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 41 - 106
Target Start/End: Complemental strand, 23239499 - 23239434
Alignment:
| Q |
41 |
aggtgactcgtctcaagattagttaaattaattgtatataatgagttattaaacatagtaacttat |
106 |
Q |
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| T |
23239499 |
aggtgactcgtctcaatattagttaaattaattgtttataatgagttgttaaatataacaacttat |
23239434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 209 - 293
Target Start/End: Complemental strand, 23239336 - 23239252
Alignment:
| Q |
209 |
atgaaatagagagagtaattataaaagtaaaaagattatgatgagcatagaaaatcaaagacttagacataataaataaatattt |
293 |
Q |
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| T |
23239336 |
atgaaattgagagagaaattataagagcaaaaaaatgatgacgataaaagaaaatcaaaggcttagacataatagataaatattt |
23239252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 23234243 - 23234198
Alignment:
| Q |
39 |
ctaggtgactcgtctcaagattagttaaattaattgtatataatga |
84 |
Q |
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| T |
23234243 |
ctaggtgactcgtctcgattttagttaaattaattgtttataatga |
23234198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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