View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20702_low_14 (Length: 328)
Name: NF20702_low_14
Description: NF20702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20702_low_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 33432794 - 33433106
Alignment:
| Q |
1 |
tagagccacatttgttgtgaatgaagacatgacgcacccacaaatcctccataagcaaaccaaccccttcttcaaaaactctgattgagttagtaagatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33432794 |
tagagccacatttgttgtgaatgaagacatgacgcacccacaaatcctccataagcaaaccaaccccttcttcaaaaactctgattgagttagtaagatt |
33432893 |
T |
|
| Q |
101 |
agaaccatcaatctcggacgaagaattagccttcaaattaaatatacaaaaactgttattattatg--agaaaaggaaagggggacacagtaataaccag |
198 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | | || ||||||||||||||||||||||||||||| |
|
|
| T |
33432894 |
agaacaatcaatctcggatgaagaattagccttcaaattaaatatacaaaaactgttattatgaggaaaggaaaggaaagggggacacagtaataaccag |
33432993 |
T |
|
| Q |
199 |
gtaaggtaaggtcgattatatgttacctggattagaggacaactaacgttggcttcctggatgatctcaacagagggagttgtttccattccatactttt |
298 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
33432994 |
gtaagttaaggtcgattatatgttacctggattagagaacaactaacgttggcttcctggatgatatcaccagagggagttgtttccattccatactttt |
33433093 |
T |
|
| Q |
299 |
tgaggtaagtttc |
311 |
Q |
| |
|
||||||||||||| |
|
|
| T |
33433094 |
tgaggtaagtttc |
33433106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 6 - 160
Target Start/End: Complemental strand, 33966681 - 33966527
Alignment:
| Q |
6 |
ccacatttgttgtgaatgaagacatgacgcacccacaaatcctccataagcaaaccaaccccttcttcaaaaactctgattgagttagtaagattagaac |
105 |
Q |
| |
|
||||| || ||||||||||||||||| ||||||||||||| ||||||||| ||| ||||||||| || ||| |||||||| ||| ||| |||||||||| |
|
|
| T |
33966681 |
ccacacttcttgtgaatgaagacatggcgcacccacaaattctccataagaaaatcaaccccttttttaaacactctgatcgagataggaagattagaat |
33966582 |
T |
|
| Q |
106 |
catcaatctcggacgaagaattagccttcaaattaaatatacaaaaactgttatt |
160 |
Q |
| |
|
|| ||||| |||| ||||||||||||||| |||| ||||||||| ||||||| |
|
|
| T |
33966581 |
agtccatctcaaacgatgaattagccttcaaaataaaaatacaaaaattgttatt |
33966527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University