View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20702_low_15 (Length: 327)
Name: NF20702_low_15
Description: NF20702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20702_low_15 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 47828244 - 47827909
Alignment:
| Q |
1 |
atttcgtcgcttattatgtgaatgtttttgtctaatgcaaaatctactagtttgtgaagttctgatttggtcatggttatgcctaatgggtttgaaggat |
100 |
Q |
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| T |
47828244 |
atttcgtcgcttattatgtgaatgtttttgtctaatgcaaaatctactagtttgtgaagttctgatttggtcatggttatgcctaatgggtttgaaggat |
47828145 |
T |
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| Q |
101 |
tggttattagtacacctttgacattaaggttaaggttttgtgcttgtcgataggcttgttctaaacaagagaatgtgattctgaaaccgtttgaacttga |
200 |
Q |
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| T |
47828144 |
tggttattagtacacctttgacattaaggttaaggttttgtgcttgttgataggcttgttctaaacaagaggatgtgattctgaaaccgtttgaacttga |
47828045 |
T |
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| Q |
201 |
acaatgcattggaacaatttcaacacctgtacgccatttaagatctctgtcgaacctgcc---------aagtgaaaaaacttgagtgttatgaacttaa |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
47828044 |
acaatgcattggaacaatttcaacacctgtacgccatttaagatctctgtcgaacctgccaaatttattaagtgaaaaaacttgagtgttatgaacttaa |
47827945 |
T |
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| Q |
292 |
aaagtaattaaagtagtattttttaaaaattgaatc |
327 |
Q |
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|||||||||||| ||||||||||||||||||||||| |
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| T |
47827944 |
aaagtaattaaattagtattttttaaaaattgaatc |
47827909 |
T |
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