View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20702_low_17 (Length: 318)

Name: NF20702_low_17
Description: NF20702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20702_low_17
NF20702_low_17
[»] chr3 (3 HSPs)
chr3 (1-301)||(54572831-54573131)
chr3 (1-301)||(55156098-55156398)
chr3 (230-299)||(4097665-4097734)


Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 54573131 - 54572831
Alignment:
Q  1 cataaaataagcaataaaatcaaggcatctgaagaacaaaaaattacaagcatggttgttcatgagatattttgttgcaataaactagtatttttagagt 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  54573131 cataaaataagcaataaaatcaaggcatcggaagaacaaaaaattacaagcatggttgttcatgagatattttgttgcaacaaactagtatttttagagt 54573032  T
Q  101 aaaaaggaatcaaccagaaatacaaaaaattacaaaacacatttacctcatgagtacgagcagaactatttgggttcatcaagctaggataatgggaagt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  54573031 aaaaaggaatcaaccagaaatacaaaaaattacaaaacacatttacctcatgagtacgagcagaactatttgggttcatcaagctaggatgatgggaagt 54572932  T
Q  201 tgccttcgtaagatttgcctcatcattgttaatatttaggcaagtttgtgggttgggtacatttgcatctttactctggttttccatttgtggctcctgg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54572931 tgccttcgtaagatttgcctcatcattgttaatatttaggcaagtttgtgggttgggtacatttgcatctttactctggttttccatttgtggctcctgg 54572832  T
Q  301 t 301  Q
    |    
T  54572831 t 54572831  T

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Target: chr3; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 55156398 - 55156098
Alignment:
Q  1 cataaaataagcaataaaatcaaggcatctgaagaacaaaaaattacaagcatggttgttcatgagatattttgttgcaataaactagtatttttagagt 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  55156398 cataaaataagcaataaaatcaaggcatcggaagaacaaaaaattacaagcatggttgttcatgagatattttgttgcaacaaactagtatttttagagt 55156299  T
Q  101 aaaaaggaatcaaccagaaatacaaaaaattacaaaacacatttacctcatgagtacgagcagaactatttgggttcatcaagctaggataatgggaagt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  55156298 aaaaaggaatcaaccagaaatacaaaaaattacaaaacacatttacctcatgagtacgagcagaactatttgggttcatcaagctaggatgatgggaagt 55156199  T
Q  201 tgccttcgtaagatttgcctcatcattgttaatatttaggcaagtttgtgggttgggtacatttgcatctttactctggttttccatttgtggctcctgg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55156198 tgccttcgtaagatttgcctcatcattgttaatatttaggcaagtttgtgggttgggtacatttgcatctttactctggttttccatttgtggctcctgg 55156099  T
Q  301 t 301  Q
    |    
T  55156098 t 55156098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 230 - 299
Target Start/End: Complemental strand, 4097734 - 4097665
Alignment:
Q  230 taatatttaggcaagtttgtgggttgggtacatttgcatctttactctggttttccatttgtggctcctg 299  Q
    ||||||||||||||| ||||  ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4097734 taatatttaggcaagcttgtcagttggatacatttgcatctttactctggttttccatttgtggctcctg 4097665  T

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