View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20702_low_19 (Length: 301)
Name: NF20702_low_19
Description: NF20702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20702_low_19 |
 | |
|
| [»] scaffold0054 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 20 - 286
Target Start/End: Complemental strand, 25319428 - 25319162
Alignment:
| Q |
20 |
tggtgttaaatgggtatgttgctttgatgtcatgtaatgaaaagatgactacttttcacgtatcaattggtatgaaggaatcgtggtccgaactctttac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25319428 |
tggtgttaaatgggtatgttgctttgatctcatatcatgaaaagatgactacttttcacgtatcaattggtatgaaggaatcgtggtccgaactctttac |
25319329 |
T |
|
| Q |
120 |
atttgaaccattgccttgtgttgagcgcccaattagagcgggggtgaagggggaaatatttttcaaaagaaaagataaggaattagtttggcttgatttg |
219 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25319328 |
atttgaaccattgctttgtgttgagcgcccaattagagttggggtgacgggggaaatatttttcaaaagaaaagataaggaattagtttggcttgatttg |
25319229 |
T |
|
| Q |
220 |
agcacccaattgattgagatgcttggttgcaaaggagagggttgtactcagataacaatatacaagg |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
25319228 |
agcacccaattgattgagatgcttggttgcaaagaagagggttgtactcagataacaatatacaagg |
25319162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 20 - 286
Target Start/End: Complemental strand, 26149121 - 26148855
Alignment:
| Q |
20 |
tggtgttaaatgggtatgttgctttgatgtcatgtaatgaaaagatgactacttttcacgtatcaattggtatgaaggaatcgtggtccgaactctttac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26149121 |
tggtgttaaatgggtatgttgctttgatctcatatcatgaaaagatgactacttttcacgtatcaattggtatgaaggaatcgtggtccgaactctttac |
26149022 |
T |
|
| Q |
120 |
atttgaaccattgccttgtgttgagcgcccaattagagcgggggtgaagggggaaatatttttcaaaagaaaagataaggaattagtttggcttgatttg |
219 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26149021 |
atttgaaccattgctttgtgttgagcgcccaattagagttggggtgacgggggaaatatttttcaaaagaaaagataaggaattagtttggcttgatttg |
26148922 |
T |
|
| Q |
220 |
agcacccaattgattgagatgcttggttgcaaaggagagggttgtactcagataacaatatacaagg |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26148921 |
agcacccaattgattgagatgcttggttgcaaagaagagggttgtactcagataacaatatacaagg |
26148855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 88 - 247
Target Start/End: Original strand, 29124187 - 29124346
Alignment:
| Q |
88 |
ggtatgaaggaatcgtggtccgaactctttacatttgaaccattgccttgtgttgagcgcccaattagagcgggggtgaagggggaaatatttttcaaaa |
187 |
Q |
| |
|
|||||||||||||| ||| || | ||||| || | | |||||||||||||||||| || || ||| ||| ||| |||||||||||||||| |||| | |
|
|
| T |
29124187 |
ggtatgaaggaatcatggaccaagctcttcactatgggaccattgccttgtgttgatcgtcctattggagtgggtatgaagggggaaatattcttcatta |
29124286 |
T |
|
| Q |
188 |
gaaaagataaggaattagtttggcttgatttgagcacccaattgattgagatgcttggtt |
247 |
Q |
| |
|
|||||||||| ||| ||| |||| |||||||||| |||||| |||||||| |||||||| |
|
|
| T |
29124287 |
gaaaagataaagaactagcttggtttgatttgagtacccaaatgattgaggagcttggtt |
29124346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 88 - 247
Target Start/End: Complemental strand, 32960772 - 32960613
Alignment:
| Q |
88 |
ggtatgaaggaatcgtggtccgaactctttacatttgaaccattgccttgtgttgagcgcccaattagagcgggggtgaagggggaaatatttttcaaaa |
187 |
Q |
| |
|
|||||||||||||| ||| | ||||||||| || ||||||||||||||||||||| || || ||| |||| ||||||||||||||| |||| || |
|
|
| T |
32960772 |
ggtatgaaggaatcttggatcaaactctttattgttagaccattgccttgtgttgagcgtcctatgggagtggggaagaagggggaaatattcttcataa |
32960673 |
T |
|
| Q |
188 |
gaaaagataaggaattagtttggcttgatttgagcacccaattgattgagatgcttggtt |
247 |
Q |
| |
|
|||||||| | |||||||||| | |||||||| | |||||| |||||| || |||||||| |
|
|
| T |
32960672 |
gaaaagatgaagaattagttttgtttgatttgggtacccaaatgattgtgaagcttggtt |
32960613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 247
Target Start/End: Original strand, 34282035 - 34282116
Alignment:
| Q |
166 |
aagggggaaatatttttcaaaagaaaagataaggaattagtttggcttgatttgagcacccaattgattgagatgcttggtt |
247 |
Q |
| |
|
|||||||||||||| |||| |||||||||||| ||| | | |||| |||||||||| |||||| ||||||| ||||||||| |
|
|
| T |
34282035 |
aagggggaaatattcttcataagaaaagataaagaagtggcttggtttgatttgagtacccaaatgattgacgtgcttggtt |
34282116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 247
Target Start/End: Complemental strand, 32744902 - 32744740
Alignment:
| Q |
85 |
attggtatgaaggaatcgtggtccgaactctttacatttgaaccattgccttgtgttgagcgcccaattagagcgggggtgaagggggaaatatttttca |
184 |
Q |
| |
|
||||||||||| ||||| ||| || | ||||| || ||| |||||||||||| ||||| || || ||| ||| ||| |||||||||||||| |||| |
|
|
| T |
32744902 |
attggtatgaaagaatcatggaccaatctcttcactattggaccattgccttgcgttgatcggcctattggagtgggtacaaagggggaaatattcttca |
32744803 |
T |
|
| Q |
185 |
aaagaaaagataaggaattagtttggcttgatttgagcacccaattgattgagatgcttggtt |
247 |
Q |
| |
|
|||||| ||| | ||| | | |||| |||||||||| |||||| |||||||| |||||||| |
|
|
| T |
32744802 |
taagaaacgatgaagaactggcttggtttgatttgagtacccaaatgattgaggagcttggtt |
32744740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 29012955 - 29013020
Alignment:
| Q |
172 |
gaaatatttttcaaaagaaaagataaggaattagtttggcttgatttgagcacccaattgattgag |
237 |
Q |
| |
|
|||||||| |||| ||||||||| | ||| ||||||||||||||||||| |||||| |||||||| |
|
|
| T |
29012955 |
gaaatattcttcatcagaaaagatgaagaactagtttggcttgatttgagtacccaaatgattgag |
29013020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 247
Target Start/End: Original strand, 29137359 - 29137480
Alignment:
| Q |
126 |
accattgccttgtgttgagcgcccaattagagcgggggtgaagggggaaatatttttcaaaagaaaagataaggaattagtttggcttgatttgagcacc |
225 |
Q |
| |
|
||||||||||||||||||||| || || ||| |||| ||||||||||||| || | |||||||||||| ||| ||| |||| ||||||| || ||| |
|
|
| T |
29137359 |
accattgccttgtgttgagcgtccttttggagtggggacaaagggggaaatatcctttacaagaaaagataaagaactagcttggtttgatttaagtacc |
29137458 |
T |
|
| Q |
226 |
caattgattgagatgcttggtt |
247 |
Q |
| |
|
||| |||| ||| |||||||| |
|
|
| T |
29137459 |
caaatgatcgaggagcttggtt |
29137480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 166 - 237
Target Start/End: Complemental strand, 34258215 - 34258144
Alignment:
| Q |
166 |
aagggggaaatatttttcaaaagaaaagataaggaattagtttggcttgatttgagcacccaattgattgag |
237 |
Q |
| |
|
|||||||||||||| |||| |||||||||||| || ||| |||| || |||||||||||||| ||||||| |
|
|
| T |
34258215 |
aagggggaaatattcttcataagaaaagataaaaaactagcttggtttaatttgagcacccaaacgattgag |
34258144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 32744978 - 32744912
Alignment:
| Q |
21 |
ggtgttaaatgggtatgttgctttgatgtcatgtaatgaaaagatgactacttttcacgtatcaatt |
87 |
Q |
| |
|
|||||||||||||| |||| ||||| |||| | ||||||||| ||||||||||||| |||||||| |
|
|
| T |
32744978 |
ggtgttaaatgggtccattgcattgatctcatattatgaaaagacgactacttttcacatatcaatt |
32744912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 236
Target Start/End: Complemental strand, 33500 - 33358
Alignment:
| Q |
94 |
aaggaatcgtggtccgaactctttacatttgaaccattgccttgtgttgagcgcccaattagagcgggggtgaagggggaaatatttttcaaaagaaaag |
193 |
Q |
| |
|
|||||||||||| || ||||||| || ||| ||| ||| |||| |||||||| || || |||| |||| ||| |||||||| || ||| |||| |||| |
|
|
| T |
33500 |
aaggaatcgtggaccaaactcttcactgttggaccgttgtcttgcgttgagcgtcctatcagagtggggacgaaaggggaaattttcttccaaaggaaag |
33401 |
T |
|
| Q |
194 |
ataaggaattagtttggcttgatttgagcacccaattgattga |
236 |
Q |
| |
|
|||| ||||||| |||| ||||| | || |||||| ||||||| |
|
|
| T |
33400 |
ataatgaattagcttggtttgatctaagtacccaagtgattga |
33358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 236
Target Start/End: Complemental strand, 39851 - 39709
Alignment:
| Q |
94 |
aaggaatcgtggtccgaactctttacatttgaaccattgccttgtgttgagcgcccaattagagcgggggtgaagggggaaatatttttcaaaagaaaag |
193 |
Q |
| |
|
|||||||||||| | |||||||||| ||| ||| ||| |||| |||||||| || || ||| |||| || |||||||| || ||| ||||||||| |
|
|
| T |
39851 |
aaggaatcgtggatcaaactctttactgttggaccgttgtcttgcgttgagcgtcctatcggagtggggacaaaaggggaaattttcttccaaagaaaag |
39752 |
T |
|
| Q |
194 |
ataaggaattagtttggcttgatttgagcacccaattgattga |
236 |
Q |
| |
|
|||| ||||||| |||| ||||| | || |||||| ||||||| |
|
|
| T |
39751 |
ataatgaattagcttggtttgatctaagtacccaagtgattga |
39709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University