View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20702_low_2 (Length: 647)
Name: NF20702_low_2
Description: NF20702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20702_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 545; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 11 - 604
Target Start/End: Complemental strand, 25380315 - 25379722
Alignment:
| Q |
11 |
catcatcatctgaactaaaagtctcctcttcattattagcaccagcatcatgaaagaaatccccaccactgcagataaatattttaaaatacaaatataa |
110 |
Q |
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| T |
25380315 |
catcatcatctgaactaaaagtctcctcttcattattagcaccggcatcatgaaagaaatccccaccactgcagataaatattttaaaatacaaatataa |
25380216 |
T |
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| Q |
111 |
atctatttacagtacagcacgtggcttaaaagtgacggtaacaacaatcactggatgatggtaaagaagatgtttggaaccacgtaagatgtgcaatgaa |
210 |
Q |
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| T |
25380215 |
atctatttacagtacagcacgtggctaaaaagtgacggtaacaacaatcactggatgatggtaaagaagatgtttggaaccacgtaagatgtgcaatgaa |
25380116 |
T |
|
| Q |
211 |
ttgcagtaaataaagcaacaaagatgtttactgcgctatacgcagattttcaacatagatatatattttcatattnnnnnnntataattgacaaggaaat |
310 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||| |
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| T |
25380115 |
ttgcagtaaataaagcaacaaagatgtttactgtgctatacgcagattttcaacacagatatatattttcattttaaaaaaatataattgacaaggaaat |
25380016 |
T |
|
| Q |
311 |
aaatcgtgaaagctaacaaagggtagaagattctacctaactcaatcacatacaacgaatatacacatatatcttaacttcttaggctactaactattag |
410 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25380015 |
aaatcgcgaaagctaacaaagggtagaagattctacctaactcaatcacatacaacgaatatacacatatatcttaacttcttaggctactaactattag |
25379916 |
T |
|
| Q |
411 |
ctacactaaagatactccaatactgctttgataatacactgtcgagctgtgttgcttacctttgattggtggaagattttgcctcctttttctgtatagg |
510 |
Q |
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| T |
25379915 |
ctacactaaagatactccaatactgctttgataatacactgtcgagctgtgttgcttacctttgattggtggaagattttgcctcctttttctgtatagg |
25379816 |
T |
|
| Q |
511 |
gaaacaaatggtacagttagtgaaatttaagccataagcctactaataacaatagctgggaattgtaacacagggaatatagttgagaatacct |
604 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
25379815 |
gaaacaaatggtacagttagtgaaatttaagccataagcctactaataacaatagctgggaattgtaacacaaggaatatagttgagaatacct |
25379722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 489 - 540
Target Start/End: Original strand, 38341114 - 38341165
Alignment:
| Q |
489 |
ttgcctcctttttctgtatagggaaacaaatggtacagttagtgaaatttaa |
540 |
Q |
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||||||||||||||| |||| ||||||||||| |||||| ||||||||||| |
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| T |
38341114 |
ttgcctcctttttctacatagagaaacaaatggaacagttggtgaaatttaa |
38341165 |
T |
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