View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20702_low_25 (Length: 252)

Name: NF20702_low_25
Description: NF20702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20702_low_25
NF20702_low_25
[»] chr6 (16 HSPs)
chr6 (11-252)||(25319612-25319853)
chr6 (11-252)||(26149305-26149546)
chr6 (51-105)||(29130867-29130921)
chr6 (58-105)||(23216420-23216467)
chr6 (55-105)||(29149192-29149242)
chr6 (55-121)||(34278926-34278992)
chr6 (55-120)||(29152557-29152622)
chr6 (55-105)||(29299624-29299674)
chr6 (56-105)||(29012456-29012505)
chr6 (55-107)||(34281484-34281536)
chr6 (58-105)||(29144850-29144897)
chr6 (198-252)||(32745196-32745250)
chr6 (56-112)||(23223848-23223904)
chr6 (198-252)||(32961063-32961117)
chr6 (198-252)||(34281624-34281678)
chr6 (198-247)||(2742201-2742250)
[»] scaffold0054 (4 HSPs)
scaffold0054 (198-252)||(40130-40184)
scaffold0054 (198-252)||(33779-33833)
scaffold0054 (56-100)||(33922-33966)
scaffold0054 (56-100)||(40273-40317)
[»] chr8 (7 HSPs)
chr8 (197-236)||(27183644-27183683)
chr8 (198-236)||(27230593-27230631)
chr8 (56-105)||(3368283-3368332)
chr8 (54-105)||(27183519-27183570)
chr8 (63-104)||(9787918-9787959)
chr8 (197-238)||(13473222-13473263)
chr8 (58-98)||(4027476-4027516)
[»] chr7 (5 HSPs)
chr7 (197-239)||(5393747-5393789)
chr7 (51-105)||(42445882-42445936)
chr7 (197-242)||(5442082-5442127)
chr7 (197-242)||(5451092-5451137)
chr7 (57-98)||(25627761-25627802)
[»] chr5 (9 HSPs)
chr5 (56-98)||(30651129-30651171)
chr5 (56-98)||(31777475-31777517)
chr5 (55-97)||(9575888-9575930)
chr5 (198-240)||(16227890-16227932)
chr5 (197-239)||(32642642-32642684)
chr5 (197-239)||(37512600-37512642)
chr5 (197-239)||(40548983-40549025)
chr5 (53-94)||(42630074-42630115)
chr5 (198-246)||(27173757-27173805)
[»] scaffold0134 (2 HSPs)
scaffold0134 (56-105)||(16702-16751)
scaffold0134 (198-239)||(16559-16600)
[»] chr3 (1 HSPs)
chr3 (57-106)||(2703335-2703384)
[»] chr2 (6 HSPs)
chr2 (58-106)||(27724743-27724791)
chr2 (58-98)||(34324900-34324940)
chr2 (59-105)||(7489232-7489278)
chr2 (59-105)||(7499372-7499418)
chr2 (198-252)||(16920702-16920756)
chr2 (58-106)||(27717420-27717468)
[»] scaffold0129 (2 HSPs)
scaffold0129 (58-105)||(17603-17650)
scaffold0129 (58-105)||(33999-34046)
[»] scaffold0831 (1 HSPs)
scaffold0831 (58-98)||(1762-1802)


Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 25319853 - 25319612
Alignment:
Q  11 cacagatgaagctaaagctttagttgaagtttggttttattcttgtcttcatggatttggttatgaccatgttataaatgactataaggtcattcaggat 110  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||    
T  25319853 cacagatgaagctaaggctttagttgaagtttggttttattcttgtcttcatggatttggttatgaccatgttataagtgattataaggtcattcgggat 25319754  T
Q  111 gtacaagttttgacacaaccatcatttcaatactctgatgaccttgaagaaatcacaactttaggctggttggaagaaattaatgcttgggagatatata 210  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  25319753 gtacaagttttgatacaaccatcatttcaatactctgatgaccttgaagaaattacaactttaggctggttggaagaaattaatgcttgggagatatata 25319654  T
Q  211 gcctaagaagtaactcatggagaaaacttcatattgagatgc 252  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  25319653 gcctaagaagtaactcatggagaaaacttgatattgagatgc 25319612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 26149546 - 26149305
Alignment:
Q  11 cacagatgaagctaaagctttagttgaagtttggttttattcttgtcttcatggatttggttatgaccatgttataaatgactataaggtcattcaggat 110  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||    
T  26149546 cacagatgaagctaaggctttagttgaagtttggttttattcttgtcttcatggatttggttatgaccatgttataagtgattataaggtcattcgggat 26149447  T
Q  111 gtacaagttttgacacaaccatcatttcaatactctgatgaccttgaagaaatcacaactttaggctggttggaagaaattaatgcttgggagatatata 210  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26149446 gtacaagttttgatacaaccatcatttcaatactctgatgaccttgaagaaattacaactttaggctggttggaagaaattaatgcttgggagatatata 26149347  T
Q  211 gcctaagaagtaactcatggagaaaacttcatattgagatgc 252  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  26149346 gcctaagaagtaactcatggagaaaacttgatattgagatgc 26149305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 51 - 105
Target Start/End: Original strand, 29130867 - 29130921
Alignment:
Q  51 tcttgtcttcatggatttggttatgaccatgttataaatgactataaggtcattc 105  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29130867 tcttgtattcatggatttagttatgaccatgttataaatgactataaggtcattc 29130921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 23216467 - 23216420
Alignment:
Q  58 ttcatggatttggttatgaccatgttataaatgactataaggtcattc 105  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  23216467 ttcatggatttggttatgaccatgttataaatgactataagatcattc 23216420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 29149242 - 29149192
Alignment:
Q  55 gtcttcatggatttggttatgaccatgttataaatgactataaggtcattc 105  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  29149242 gtcttcatggatttggttatgaccatgttataaacgactataatgtcattc 29149192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 121
Target Start/End: Complemental strand, 34278992 - 34278926
Alignment:
Q  55 gtcttcatggatttggttatgaccatgttataaatgactataaggtcattcaggatgtacaagtttt 121  Q
    |||||||||||||||||||| ||||||||| |||||||||||| ||||||| | ||||| |||||||    
T  34278992 gtcttcatggatttggttataaccatgttacaaatgactataatgtcattcggcatgtaaaagtttt 34278926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 29152622 - 29152557
Alignment:
Q  55 gtcttcatggatttggttatgaccatgttataaatgactataaggtcattcaggatgtacaagttt 120  Q
    |||||||||||||||||||| ||||||||| |||||||||||| ||||||||| || || ||||||    
T  29152622 gtcttcatggatttggttataaccatgttacaaatgactataatgtcattcagcatataaaagttt 29152557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 29299624 - 29299674
Alignment:
Q  55 gtcttcatggatttggttatgaccatgttataaatgactataaggtcattc 105  Q
    |||||||||||||||||||||||| ||||| ||||||||| ||||||||||    
T  29299624 gtcttcatggatttggttatgaccttgttaaaaatgactacaaggtcattc 29299674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 29012456 - 29012505
Alignment:
Q  56 tcttcatggatttggttatgaccatgttataaatgactataaggtcattc 105  Q
    ||||||||||||||||||||||| ||||| ||| ||||||||||||||||    
T  29012456 tcttcatggatttggttatgaccgtgttacaaaagactataaggtcattc 29012505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 34281484 - 34281536
Alignment:
Q  55 gtcttcatggatttggttatgaccatgttataaatgactataaggtcattcag 107  Q
    |||||||||||||||||||| |||||||||  ||||||||||| |||||||||    
T  34281484 gtcttcatggatttggttataaccatgttacgaatgactataatgtcattcag 34281536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 29144850 - 29144897
Alignment:
Q  58 ttcatggatttggttatgaccatgttataaatgactataaggtcattc 105  Q
    |||||||||||||||||||||||||||||||||||  ||| |||||||    
T  29144850 ttcatggatttggttatgaccatgttataaatgacattaaagtcattc 29144897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 252
Target Start/End: Complemental strand, 32745250 - 32745196
Alignment:
Q  198 tgggagatatatagcctaagaagtaactcatggagaaaacttcatattgagatgc 252  Q
    ||||||||||||||||||||||||||||| ||||| |||||| || |||| ||||    
T  32745250 tgggagatatatagcctaagaagtaactcctggaggaaacttgatgttgacatgc 32745196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 23223904 - 23223848
Alignment:
Q  56 tcttcatggatttggttatgaccatgttataaatgactataaggtcattcaggatgt 112  Q
    ||||||||| |||||||||||   ||||||||||||||||||| |||||||| ||||    
T  23223904 tcttcatgggtttggttatgattgtgttataaatgactataagatcattcagtatgt 23223848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 252
Target Start/End: Complemental strand, 32961117 - 32961063
Alignment:
Q  198 tgggagatatatagcctaagaagtaactcatggagaaaacttcatattgagatgc 252  Q
    ||||||||||||||| ||||||||||||| ||||| |||||| || |||| ||||    
T  32961117 tgggagatatatagcgtaagaagtaactcgtggaggaaacttgatgttgacatgc 32961063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 252
Target Start/End: Original strand, 34281624 - 34281678
Alignment:
Q  198 tgggagatatatagcctaagaagtaactcatggagaaaacttcatattgagatgc 252  Q
    |||||||||||||||||||| |||||||| |||||| ||||| || |||| ||||    
T  34281624 tgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgc 34281678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 2742250 - 2742201
Alignment:
Q  198 tgggagatatatagcctaagaagtaactcatggagaaaacttcatattga 247  Q
    |||||||||||||| |||||||| || || |||||||||||| |||||||    
T  2742250 tgggagatatatagtctaagaagcaattcttggagaaaacttaatattga 2742201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 198 - 252
Target Start/End: Complemental strand, 40184 - 40130
Alignment:
Q  198 tgggagatatatagcctaagaagtaactcatggagaaaacttcatattgagatgc 252  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||    
T  40184 tgggagatatatagcctaagaagtaactcgtggagaaaacttgatattgacatgc 40130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 252
Target Start/End: Complemental strand, 33833 - 33779
Alignment:
Q  198 tgggagatatatagcctaagaagtaactcatggagaaaacttcatattgagatgc 252  Q
    ||||||||||||||||||||||||||||| ||||| |||||| ||||||| ||||    
T  33833 tgggagatatatagcctaagaagtaactcgtggaggaaacttgatattgacatgc 33779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 33966 - 33922
Alignment:
Q  56 tcttcatggatttggttatgaccatgttataaatgactataaggt 100  Q
    |||||||||||||||||||||   ||||||| |||||||||||||    
T  33966 tcttcatggatttggttatgatagtgttatagatgactataaggt 33922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 40317 - 40273
Alignment:
Q  56 tcttcatggatttggttatgaccatgttataaatgactataaggt 100  Q
    |||||||||||||||||||||   ||||||| |||||||||||||    
T  40317 tcttcatggatttggttatgatagtgttatagatgactataaggt 40273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 27183644 - 27183683
Alignment:
Q  197 ttgggagatatatagcctaagaagtaactcatggagaaaa 236  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  27183644 ttgggagatatatagcctaagaagtaactcttggagaaaa 27183683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 236
Target Start/End: Complemental strand, 27230631 - 27230593
Alignment:
Q  198 tgggagatatatagcctaagaagtaactcatggagaaaa 236  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  27230631 tgggagatatatagcctaagaagtaactcttggagaaaa 27230593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 3368332 - 3368283
Alignment:
Q  56 tcttcatggatttggttatgaccatgttataaatgactataaggtcattc 105  Q
    |||||||||||||||||||||||| |||| | ||||||||||||| ||||    
T  3368332 tcttcatggatttggttatgaccaagttagagatgactataaggtaattc 3368283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 105
Target Start/End: Original strand, 27183519 - 27183570
Alignment:
Q  54 tgtcttcatggatttggttatgaccatgttataaatgactataaggtcattc 105  Q
    ||||||||||||||||||||||||||||| | | ||||||| ||||| ||||    
T  27183519 tgtcttcatggatttggttatgaccatgtcagagatgactacaaggttattc 27183570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 9787959 - 9787918
Alignment:
Q  63 ggatttggttatgaccatgttataaatgactataaggtcatt 104  Q
    ||||||||||||||||||| || |||||| ||||||||||||    
T  9787959 ggatttggttatgaccatgctacaaatgattataaggtcatt 9787918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 13473263 - 13473222
Alignment:
Q  197 ttgggagatatatagcctaagaagtaactcatggagaaaact 238  Q
    |||||||||||||||  ||||||||||||| |||||||||||    
T  13473263 ttgggagatatatagtttaagaagtaactcgtggagaaaact 13473222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 4027476 - 4027516
Alignment:
Q  58 ttcatggatttggttatgaccatgttataaatgactataag 98  Q
    ||||||||||||||||||||| ||||| | |||||||||||    
T  4027476 ttcatggatttggttatgaccgtgttagagatgactataag 4027516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 5393789 - 5393747
Alignment:
Q  197 ttgggagatatatagcctaagaagtaactcatggagaaaactt 239  Q
    ||||||||||||||||||| | |||||||||||||||||||||    
T  5393789 ttgggagatatatagcctacggagtaactcatggagaaaactt 5393747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 105
Target Start/End: Original strand, 42445882 - 42445936
Alignment:
Q  51 tcttgtcttcatggatttggttatgaccatgttataaatgactataaggtcattc 105  Q
    |||| ||||||||||||||||||||||  ||||| | ||||||||||||||||||    
T  42445882 tcttatcttcatggatttggttatgacagtgttacagatgactataaggtcattc 42445936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 242
Target Start/End: Original strand, 5442082 - 5442127
Alignment:
Q  197 ttgggagatatatagcctaagaagtaactcatggagaaaacttcat 242  Q
    ||||||||||||||||||| |||||||||| |||||  ||||||||    
T  5442082 ttgggagatatatagcctacgaagtaactcgtggagggaacttcat 5442127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 242
Target Start/End: Original strand, 5451092 - 5451137
Alignment:
Q  197 ttgggagatatatagcctaagaagtaactcatggagaaaacttcat 242  Q
    ||||||||||||||||||| |||||||||| |||||  ||||||||    
T  5451092 ttgggagatatatagcctacgaagtaactcgtggagggaacttcat 5451137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 25627761 - 25627802
Alignment:
Q  57 cttcatggatttggttatgaccatgttataaatgactataag 98  Q
    ||||||||||||||||||||||||| || | |||||||||||    
T  25627761 cttcatggatttggttatgaccatgctagagatgactataag 25627802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 98
Target Start/End: Original strand, 30651129 - 30651171
Alignment:
Q  56 tcttcatggatttggttatgaccatgttataaatgactataag 98  Q
    ||||||||||||||||||||||||||||| | |||||||||||    
T  30651129 tcttcatggatttggttatgaccatgttagagatgactataag 30651171  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 98
Target Start/End: Original strand, 31777475 - 31777517
Alignment:
Q  56 tcttcatggatttggttatgaccatgttataaatgactataag 98  Q
    ||||||||||||||||||||||||||||| | |||||||||||    
T  31777475 tcttcatggatttggttatgaccatgttagagatgactataag 31777517  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 97
Target Start/End: Complemental strand, 9575930 - 9575888
Alignment:
Q  55 gtcttcatggatttggttatgaccatgttataaatgactataa 97  Q
    ||||||||||||||||||||||||| |||| | ||||||||||    
T  9575930 gtcttcatggatttggttatgaccaagttacatatgactataa 9575888  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 16227932 - 16227890
Alignment:
Q  198 tgggagatatatagcctaagaagtaactcatggagaaaacttc 240  Q
    |||||||||||||||||| |||||||||| ||||| |||||||    
T  16227932 tgggagatatatagcctacgaagtaactcgtggaggaaacttc 16227890  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 32642642 - 32642684
Alignment:
Q  197 ttgggagatatatagcctaagaagtaactcatggagaaaactt 239  Q
    |||||||||||||||  ||||||||||||| ||||||||||||    
T  32642642 ttgggagatatatagtttaagaagtaactcttggagaaaactt 32642684  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 37512600 - 37512642
Alignment:
Q  197 ttgggagatatatagcctaagaagtaactcatggagaaaactt 239  Q
    |||||| ||||||||||||||||| ||||| ||||||||||||    
T  37512600 ttgggatatatatagcctaagaagcaactcttggagaaaactt 37512642  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 40548983 - 40549025
Alignment:
Q  197 ttgggagatatatagcctaagaagtaactcatggagaaaactt 239  Q
    ||||||||| |||||||||||||||||||| ||||| ||||||    
T  40548983 ttgggagatttatagcctaagaagtaactcgtggaggaaactt 40549025  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 94
Target Start/End: Complemental strand, 42630115 - 42630074
Alignment:
Q  53 ttgtcttcatggatttggttatgaccatgttataaatgacta 94  Q
    ||||||||||||||||||||||||||| |||| | |||||||    
T  42630115 ttgtcttcatggatttggttatgaccaagttaaagatgacta 42630074  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 27173805 - 27173757
Alignment:
Q  198 tgggagatatatagcctaagaagtaactcatggagaaaacttcatattg 246  Q
    ||||||||||| ||||||| ||||||||| ||||| |||||| ||||||    
T  27173805 tgggagatatacagcctaaaaagtaactcttggaggaaacttgatattg 27173757  T

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Target: scaffold0134 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 16751 - 16702
Alignment:
Q  56 tcttcatggatttggttatgaccatgttataaatgactataaggtcattc 105  Q
    |||||| |||||||||||| ||| ||||||||||||||||||| ||||||    
T  16751 tcttcacggatttggttatcaccgtgttataaatgactataagatcattc 16702  T

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Target: scaffold0134; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 239
Target Start/End: Complemental strand, 16600 - 16559
Alignment:
Q  198 tgggagatatatagcctaagaagtaactcatggagaaaactt 239  Q
    ||||||||||||||||||| ||||||||| ||||| ||||||    
T  16600 tgggagatatatagcctaacaagtaactcgtggaggaaactt 16559  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 2703335 - 2703384
Alignment:
Q  57 cttcatggatttggttatgaccatgttataaatgactataaggtcattca 106  Q
    ||||||||||||||||||||||||||||   |||||||||| ||||||||    
T  2703335 cttcatggatttggttatgaccatgttagggatgactataaagtcattca 2703384  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 27724791 - 27724743
Alignment:
Q  58 ttcatggatttggttatgaccatgttataaatgactataaggtcattca 106  Q
    ||||||||||||||||||||||||||  | ||||||| |||||||||||    
T  27724791 ttcatggatttggttatgaccatgttcgagatgactacaaggtcattca 27724743  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 34324900 - 34324940
Alignment:
Q  58 ttcatggatttggttatgaccatgttataaatgactataag 98  Q
    ||||||||||||||||||||||||||| | |||||||||||    
T  34324900 ttcatggatttggttatgaccatgttagagatgactataag 34324940  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 7489278 - 7489232
Alignment:
Q  59 tcatggatttggttatgaccatgttataaatgactataaggtcattc 105  Q
    ||||||||| ||||||||||||||||  |||||||||||||| ||||    
T  7489278 tcatggattcggttatgaccatgttaggaatgactataaggtgattc 7489232  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 7499418 - 7499372
Alignment:
Q  59 tcatggatttggttatgaccatgttataaatgactataaggtcattc 105  Q
    ||||||||| ||||||||||||||||  |||||||||||||| ||||    
T  7499418 tcatggattcggttatgaccatgttaggaatgactataaggtgattc 7499372  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 252
Target Start/End: Original strand, 16920702 - 16920756
Alignment:
Q  198 tgggagatatatagcctaagaagtaactcatggagaaaacttcatattgagatgc 252  Q
    |||||||||||||| ||||||||||| || ||||| |||||| ||||||| ||||    
T  16920702 tgggagatatatagtctaagaagtaattcttggaggaaacttgatattgaaatgc 16920756  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 27717468 - 27717420
Alignment:
Q  58 ttcatggatttggttatgaccatgttataaatgactataaggtcattca 106  Q
    ||||||||||||| ||||||||||||| | ||||||||||  |||||||    
T  27717468 ttcatggatttggctatgaccatgttagagatgactataaaatcattca 27717420  T

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Target: scaffold0129 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 17650 - 17603
Alignment:
Q  58 ttcatggatttggttatgaccatgttataaatgactataaggtcattc 105  Q
    ||||||||||||||||||||||||||| | ||||||| || |||||||    
T  17650 ttcatggatttggttatgaccatgttagagatgactacaaagtcattc 17603  T

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Target: scaffold0129; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 34046 - 33999
Alignment:
Q  58 ttcatggatttggttatgaccatgttataaatgactataaggtcattc 105  Q
    ||||||||||||||||||| ||||||| | ||||||| ||||||||||    
T  34046 ttcatggatttggttatgagcatgttagagatgactacaaggtcattc 33999  T

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Target: scaffold0831 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0831
Description:

Target: scaffold0831; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 1802 - 1762
Alignment:
Q  58 ttcatggatttggttatgaccatgttataaatgactataag 98  Q
    |||||||||||||||||||||||||||  || |||||||||    
T  1802 ttcatggatttggttatgaccatgttaataacgactataag 1762  T

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